Results 1 - 20 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 110573 | 0.66 | 0.880236 |
Target: 5'- gUCCGcCagGcGUCgGUCuCGGCGACCa -3' miRNA: 3'- -GGGCaGagC-CAGgCAGuGCCGCUGGc -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 13164 | 0.66 | 0.880236 |
Target: 5'- aCCGUCaaacCGGUgagaaaCCGUacaGCGGCGuCCGu -3' miRNA: 3'- gGGCAGa---GCCA------GGCAg--UGCCGCuGGC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 111901 | 0.66 | 0.904824 |
Target: 5'- aCCGcaacCUC-GUCCG-CGCGGCGACg- -3' miRNA: 3'- gGGCa---GAGcCAGGCaGUGCCGCUGgc -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 162239 | 0.66 | 0.904824 |
Target: 5'- gCCCGaCUUGGaCgaaGUCugGGCGcCCGc -3' miRNA: 3'- -GGGCaGAGCCaGg--CAGugCCGCuGGC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 185191 | 0.66 | 0.886039 |
Target: 5'- gCCCGUgUCGcuGUCCGugUCGCGGUGGuggcgcggagaauCCGu -3' miRNA: 3'- -GGGCAgAGC--CAGGC--AGUGCCGCU-------------GGC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 98686 | 0.66 | 0.89292 |
Target: 5'- uCCCGaUCgaCGGgacCCGUCAUGGgGACg- -3' miRNA: 3'- -GGGC-AGa-GCCa--GGCAGUGCCgCUGgc -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 161918 | 0.66 | 0.880236 |
Target: 5'- aCUCGUCUCGaGUcaCCGUC-CGuaGCGACuCGg -3' miRNA: 3'- -GGGCAGAGC-CA--GGCAGuGC--CGCUG-GC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 216872 | 0.66 | 0.880236 |
Target: 5'- aCCgGUUUgaCGGUCguUCGCGGCGGCgCGa -3' miRNA: 3'- -GGgCAGA--GCCAGgcAGUGCCGCUG-GC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 200942 | 0.66 | 0.880236 |
Target: 5'- cUCCGcCUCGGagCGcagggagCGCGGCGGCUc -3' miRNA: 3'- -GGGCaGAGCCagGCa------GUGCCGCUGGc -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 190017 | 0.66 | 0.89292 |
Target: 5'- aCCCGUCUCGGgaaguaauagCGUUgGCGGCGguguacagacACCGu -3' miRNA: 3'- -GGGCAGAGCCag--------GCAG-UGCCGC----------UGGC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 125848 | 0.66 | 0.880236 |
Target: 5'- aCgGUCguaucCGGcaCCGaaGCGGCGACCGa -3' miRNA: 3'- gGgCAGa----GCCa-GGCagUGCCGCUGGC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 110283 | 0.66 | 0.886039 |
Target: 5'- uCCCGUgguacucgcgcgaCcCGG-CCGUCACGGUcucgcagcucuGGCCGg -3' miRNA: 3'- -GGGCA-------------GaGCCaGGCAGUGCCG-----------CUGGC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 148999 | 0.66 | 0.898971 |
Target: 5'- -gCGUCUCGaGcuUCUGcUGCGGCGAUCGg -3' miRNA: 3'- ggGCAGAGC-C--AGGCaGUGCCGCUGGC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 111381 | 0.66 | 0.904824 |
Target: 5'- uCCCGcUCUCaccagCCagGUCAUGcGCGACCGg -3' miRNA: 3'- -GGGC-AGAGcca--GG--CAGUGC-CGCUGGC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 93787 | 0.66 | 0.879582 |
Target: 5'- uCCCGUCgUCGGUggaggagaccuucCCaGcCcCGGCGACUGg -3' miRNA: 3'- -GGGCAG-AGCCA-------------GG-CaGuGCCGCUGGC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 172158 | 0.66 | 0.904824 |
Target: 5'- cCCCGUC-CGcuuuUCagaaGUCugGGCGaACCGu -3' miRNA: 3'- -GGGCAGaGCc---AGg---CAGugCCGC-UGGC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 98596 | 0.66 | 0.898971 |
Target: 5'- gCCGUCUcuugacgcCGGUCCGcagCAUGGUuucGCCGc -3' miRNA: 3'- gGGCAGA--------GCCAGGCa--GUGCCGc--UGGC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 102970 | 0.66 | 0.904824 |
Target: 5'- uUCCG-CgCGGUaguaGUCGCGGCGcCCGc -3' miRNA: 3'- -GGGCaGaGCCAgg--CAGUGCCGCuGGC- -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 157715 | 0.66 | 0.898971 |
Target: 5'- aCCGUCg-GGaccgCgGUCGCGGCGAUg- -3' miRNA: 3'- gGGCAGagCCa---GgCAGUGCCGCUGgc -5' |
|||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 192379 | 0.66 | 0.886674 |
Target: 5'- uCCUGg--UGGgcUUCGUCACGGUGAUCGc -3' miRNA: 3'- -GGGCagaGCC--AGGCAGUGCCGCUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home