Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 184169 | 0.68 | 0.789654 |
Target: 5'- cUCCGUCggagCGGccaUCgCGUCcCGuGCGGCCGg -3' miRNA: 3'- -GGGCAGa---GCC---AG-GCAGuGC-CGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 117716 | 0.68 | 0.806259 |
Target: 5'- aCCCGUCacccUCGcGUCUcUCGCGcGCGcACCGu -3' miRNA: 3'- -GGGCAG----AGC-CAGGcAGUGC-CGC-UGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 131242 | 0.68 | 0.830142 |
Target: 5'- --gGUCUCGGucgucUCCGUgGCGGCGGaCGu -3' miRNA: 3'- gggCAGAGCC-----AGGCAgUGCCGCUgGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 154000 | 0.68 | 0.830142 |
Target: 5'- gUCGUCUCuGUCgUGuUCGCGGCGGCgGc -3' miRNA: 3'- gGGCAGAGcCAG-GC-AGUGCCGCUGgC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 65922 | 0.68 | 0.822326 |
Target: 5'- cCCCgGUCUCGGUuaCCGUCGCcguaccaucGGCaGACg- -3' miRNA: 3'- -GGG-CAGAGCCA--GGCAGUG---------CCG-CUGgc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 115899 | 0.68 | 0.79802 |
Target: 5'- cUCUGcggCUCGGggCCGUCGuCGGCcucGGCCGg -3' miRNA: 3'- -GGGCa--GAGCCa-GGCAGU-GCCG---CUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 194855 | 0.68 | 0.789654 |
Target: 5'- aUCGuUUUCGGUgCCaggaGUCACGGCGAUCu -3' miRNA: 3'- gGGC-AGAGCCA-GG----CAGUGCCGCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 106596 | 0.68 | 0.814363 |
Target: 5'- gCCCGUCUC--UCCGg-ACGGUGcGCCGa -3' miRNA: 3'- -GGGCAGAGccAGGCagUGCCGC-UGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 194438 | 0.68 | 0.806259 |
Target: 5'- cCCCGggcgcCUCGGUCgaagCGguugggCACGGCGgcGCCGc -3' miRNA: 3'- -GGGCa----GAGCCAG----GCa-----GUGCCGC--UGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 83279 | 0.68 | 0.789654 |
Target: 5'- aCUCGaC-CGG-CC-UCGCGGCGGCCGa -3' miRNA: 3'- -GGGCaGaGCCaGGcAGUGCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 186952 | 0.69 | 0.746145 |
Target: 5'- aCCGUCcgaacgugCGGUCUGUCGCGcCGACg- -3' miRNA: 3'- gGGCAGa-------GCCAGGCAGUGCcGCUGgc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 27643 | 0.69 | 0.772564 |
Target: 5'- gCCCGUCUCGuGcgcgaUGUcUugGGUGACCGg -3' miRNA: 3'- -GGGCAGAGC-Cag---GCA-GugCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 107511 | 0.69 | 0.763855 |
Target: 5'- aCCG-CUCgcacgaggaGGUgCG-CGCGGCGACCGc -3' miRNA: 3'- gGGCaGAG---------CCAgGCaGUGCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 26402 | 0.69 | 0.772564 |
Target: 5'- cCCCGcCUCcaacUCCGcCACGGCGGCgGc -3' miRNA: 3'- -GGGCaGAGcc--AGGCaGUGCCGCUGgC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 162294 | 0.69 | 0.763855 |
Target: 5'- gCUCGUgaaCgagCGGUCgcuCGUCACGGCGAuaCCGa -3' miRNA: 3'- -GGGCA---Ga--GCCAG---GCAGUGCCGCU--GGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 148685 | 0.69 | 0.763855 |
Target: 5'- gUCCGUgUUGGUCuucggCGgaaCACGGCGAuCCGg -3' miRNA: 3'- -GGGCAgAGCCAG-----GCa--GUGCCGCU-GGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 23731 | 0.69 | 0.763855 |
Target: 5'- gUCCGUC-CGGUCCGUC-CGaucCGAUCa -3' miRNA: 3'- -GGGCAGaGCCAGGCAGuGCc--GCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 168017 | 0.69 | 0.746145 |
Target: 5'- aCgCGUCUCGGgCCGguucuguguUCGCGGgGGCUGc -3' miRNA: 3'- -GgGCAGAGCCaGGC---------AGUGCCgCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 163482 | 0.69 | 0.746145 |
Target: 5'- cUCCGUCggCGGcgCCgGUgGCGGCGGCUu -3' miRNA: 3'- -GGGCAGa-GCCa-GG-CAgUGCCGCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 151349 | 0.69 | 0.755046 |
Target: 5'- aCUCGcUCUCGGg-CGcCGCGGCG-CCGg -3' miRNA: 3'- -GGGC-AGAGCCagGCaGUGCCGCuGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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