miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 188602 0.99 0.014031
Target:  5'- cCCCGUCUCGGUCCGUCACGG-GACCGu -3'
miRNA:   3'- -GGGCAGAGCCAGGCAGUGCCgCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 114815 0.8 0.232514
Target:  5'- gCCCGg--CGGUaugccCCGUCGCGGCGGCCa -3'
miRNA:   3'- -GGGCagaGCCA-----GGCAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 22061 0.79 0.271523
Target:  5'- uCCC-UC-CGGUCgGUCGCGGCGGCCc -3'
miRNA:   3'- -GGGcAGaGCCAGgCAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 208932 0.74 0.469594
Target:  5'- -aCGUCUC--UCCGUCGUGGCGGCCGa -3'
miRNA:   3'- ggGCAGAGccAGGCAGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 169555 0.74 0.473058
Target:  5'- gCCGUCUCGGUuucugcgcgcuguugCCGcugUCGCGGCuccGGCCGg -3'
miRNA:   3'- gGGCAGAGCCA---------------GGC---AGUGCCG---CUGGC- -5'
16189 3' -59.7 NC_004065.1 + 34639 0.74 0.486162
Target:  5'- gCCGUggaagacCUCGG-CCGUCACGGUGuCCa -3'
miRNA:   3'- gGGCA-------GAGCCaGGCAGUGCCGCuGGc -5'
16189 3' -59.7 NC_004065.1 + 65212 0.73 0.531915
Target:  5'- aCCGcCUCGGguugaccCCGaagagCACGGCGACCu -3'
miRNA:   3'- gGGCaGAGCCa------GGCa----GUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 12634 0.73 0.541075
Target:  5'- -aCGUCgCGGUUCGaCACGGCGaACCGc -3'
miRNA:   3'- ggGCAGaGCCAGGCaGUGCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 21135 0.73 0.559547
Target:  5'- gCCCGgagaaCUCaGUCCGUCACcGCGcACCGu -3'
miRNA:   3'- -GGGCa----GAGcCAGGCAGUGcCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 147469 0.73 0.559547
Target:  5'- uCCaCGUCUgCGG-CCG-CAUGGUGGCCGu -3'
miRNA:   3'- -GG-GCAGA-GCCaGGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 109909 0.72 0.596967
Target:  5'- uCCCGgCUC-GUCCGcCGCGGCcGCCGu -3'
miRNA:   3'- -GGGCaGAGcCAGGCaGUGCCGcUGGC- -5'
16189 3' -59.7 NC_004065.1 + 212051 0.72 0.60639
Target:  5'- aCCCaagagGUCgcgCGGcagacggacgaCCGUCACGGCGACCu -3'
miRNA:   3'- -GGG-----CAGa--GCCa----------GGCAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 50273 0.71 0.647968
Target:  5'- gCCCGaUUCGGgccccgagaccgccgUCCG-CGCGGCGAUCGc -3'
miRNA:   3'- -GGGCaGAGCC---------------AGGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 118168 0.71 0.653633
Target:  5'- aCCG-CggcggCGG-CCGUCACGGCuGCCGc -3'
miRNA:   3'- gGGCaGa----GCCaGGCAGUGCCGcUGGC- -5'
16189 3' -59.7 NC_004065.1 + 159940 0.71 0.653633
Target:  5'- gCUCGUCgccucggGGUCCGcgccuuugaggaUCGCGGCGAUCGu -3'
miRNA:   3'- -GGGCAGag-----CCAGGC------------AGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 45285 0.71 0.653633
Target:  5'- uUCUG-CUCGGaaUCCGagccgaGCGGCGACCGa -3'
miRNA:   3'- -GGGCaGAGCC--AGGCag----UGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 57389 0.71 0.663064
Target:  5'- cUCCGgagCUCGcGgUCGUCACGGCGGCa- -3'
miRNA:   3'- -GGGCa--GAGC-CaGGCAGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 112895 0.71 0.672473
Target:  5'- gCCCGUCUCcGUCCGgaUCAgGuGCGACa- -3'
miRNA:   3'- -GGGCAGAGcCAGGC--AGUgC-CGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 84072 0.7 0.681854
Target:  5'- gCCGauggCUCGGauccugccgaCCGUCAgGGCGGCCa -3'
miRNA:   3'- gGGCa---GAGCCa---------GGCAGUgCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 74646 0.7 0.6912
Target:  5'- aCCCGggUCUgaGGUCCGgacCGCGGCGcguccGCCGu -3'
miRNA:   3'- -GGGC--AGAg-CCAGGCa--GUGCCGC-----UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.