miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 174912 0.7 0.700504
Target:  5'- aCUGUCUCGGcgCCGcCGCGgGCG-CCa -3'
miRNA:   3'- gGGCAGAGCCa-GGCaGUGC-CGCuGGc -5'
16189 3' -59.7 NC_004065.1 + 99549 0.7 0.709759
Target:  5'- uCCCGUCUCG--CCGcgGCGGaCGGCCGu -3'
miRNA:   3'- -GGGCAGAGCcaGGCagUGCC-GCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 106247 0.7 0.709759
Target:  5'- -aCGcCUgGGUCCGaCA-GGCGACCGg -3'
miRNA:   3'- ggGCaGAgCCAGGCaGUgCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 168971 0.7 0.709759
Target:  5'- gCC-UCUCGGugUCCGUCagcGCGGCgGACCu -3'
miRNA:   3'- gGGcAGAGCC--AGGCAG---UGCCG-CUGGc -5'
16189 3' -59.7 NC_004065.1 + 211547 0.7 0.717123
Target:  5'- cCCCGUCgUUGGUaccuucuucuggcCCGUCGaggaaucCGGCGGCUGu -3'
miRNA:   3'- -GGGCAG-AGCCA-------------GGCAGU-------GCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 41045 0.7 0.718958
Target:  5'- gCCGcagagCUCGGgCCG-CGCGGCGACg- -3'
miRNA:   3'- gGGCa----GAGCCaGGCaGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 59712 0.7 0.728093
Target:  5'- gCCGag-CGG-CCGcggcgCACGGCGACCGu -3'
miRNA:   3'- gGGCagaGCCaGGCa----GUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 201199 0.7 0.728093
Target:  5'- uCCCGgCUCGGg-CGgCGCGGCGACg- -3'
miRNA:   3'- -GGGCaGAGCCagGCaGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 186952 0.69 0.746145
Target:  5'- aCCGUCcgaacgugCGGUCUGUCGCGcCGACg- -3'
miRNA:   3'- gGGCAGa-------GCCAGGCAGUGCcGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 163482 0.69 0.746145
Target:  5'- cUCCGUCggCGGcgCCgGUgGCGGCGGCUu -3'
miRNA:   3'- -GGGCAGa-GCCa-GG-CAgUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 168017 0.69 0.746145
Target:  5'- aCgCGUCUCGGgCCGguucuguguUCGCGGgGGCUGc -3'
miRNA:   3'- -GgGCAGAGCCaGGC---------AGUGCCgCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 151349 0.69 0.755046
Target:  5'- aCUCGcUCUCGGg-CGcCGCGGCG-CCGg -3'
miRNA:   3'- -GGGC-AGAGCCagGCaGUGCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 23731 0.69 0.763855
Target:  5'- gUCCGUC-CGGUCCGUC-CGaucCGAUCa -3'
miRNA:   3'- -GGGCAGaGCCAGGCAGuGCc--GCUGGc -5'
16189 3' -59.7 NC_004065.1 + 148685 0.69 0.763855
Target:  5'- gUCCGUgUUGGUCuucggCGgaaCACGGCGAuCCGg -3'
miRNA:   3'- -GGGCAgAGCCAG-----GCa--GUGCCGCU-GGC- -5'
16189 3' -59.7 NC_004065.1 + 162294 0.69 0.763855
Target:  5'- gCUCGUgaaCgagCGGUCgcuCGUCACGGCGAuaCCGa -3'
miRNA:   3'- -GGGCA---Ga--GCCAG---GCAGUGCCGCU--GGC- -5'
16189 3' -59.7 NC_004065.1 + 107511 0.69 0.763855
Target:  5'- aCCG-CUCgcacgaggaGGUgCG-CGCGGCGACCGc -3'
miRNA:   3'- gGGCaGAG---------CCAgGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 152066 0.69 0.763855
Target:  5'- -gCGUCUCGGggcucgaCGUCACGuaGAUCGa -3'
miRNA:   3'- ggGCAGAGCCag-----GCAGUGCcgCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 26402 0.69 0.772564
Target:  5'- cCCCGcCUCcaacUCCGcCACGGCGGCgGc -3'
miRNA:   3'- -GGGCaGAGcc--AGGCaGUGCCGCUGgC- -5'
16189 3' -59.7 NC_004065.1 + 27643 0.69 0.772564
Target:  5'- gCCCGUCUCGuGcgcgaUGUcUugGGUGACCGg -3'
miRNA:   3'- -GGGCAGAGC-Cag---GCA-GugCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 54256 0.68 0.789654
Target:  5'- aUCGUCaUCuc-CCGUC-CGGCGACCGg -3'
miRNA:   3'- gGGCAG-AGccaGGCAGuGCCGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.