Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 184169 | 0.68 | 0.789654 |
Target: 5'- cUCCGUCggagCGGccaUCgCGUCcCGuGCGGCCGg -3' miRNA: 3'- -GGGCAGa---GCC---AG-GCAGuGC-CGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 194855 | 0.68 | 0.789654 |
Target: 5'- aUCGuUUUCGGUgCCaggaGUCACGGCGAUCu -3' miRNA: 3'- gGGC-AGAGCCA-GG----CAGUGCCGCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 54256 | 0.68 | 0.789654 |
Target: 5'- aUCGUCaUCuc-CCGUC-CGGCGACCGg -3' miRNA: 3'- gGGCAG-AGccaGGCAGuGCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 115899 | 0.68 | 0.79802 |
Target: 5'- cUCUGcggCUCGGggCCGUCGuCGGCcucGGCCGg -3' miRNA: 3'- -GGGCa--GAGCCa-GGCAGU-GCCG---CUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 194438 | 0.68 | 0.806259 |
Target: 5'- cCCCGggcgcCUCGGUCgaagCGguugggCACGGCGgcGCCGc -3' miRNA: 3'- -GGGCa----GAGCCAG----GCa-----GUGCCGC--UGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 117716 | 0.68 | 0.806259 |
Target: 5'- aCCCGUCacccUCGcGUCUcUCGCGcGCGcACCGu -3' miRNA: 3'- -GGGCAG----AGC-CAGGcAGUGC-CGC-UGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 106596 | 0.68 | 0.814363 |
Target: 5'- gCCCGUCUC--UCCGg-ACGGUGcGCCGa -3' miRNA: 3'- -GGGCAGAGccAGGCagUGCCGC-UGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 197706 | 0.68 | 0.822326 |
Target: 5'- -aCGUC-CGacgCCGUCGCGGCcGCCGu -3' miRNA: 3'- ggGCAGaGCca-GGCAGUGCCGcUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 65922 | 0.68 | 0.822326 |
Target: 5'- cCCCgGUCUCGGUuaCCGUCGCcguaccaucGGCaGACg- -3' miRNA: 3'- -GGG-CAGAGCCA--GGCAGUG---------CCG-CUGgc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 131242 | 0.68 | 0.830142 |
Target: 5'- --gGUCUCGGucgucUCCGUgGCGGCGGaCGu -3' miRNA: 3'- gggCAGAGCC-----AGGCAgUGCCGCUgGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 154000 | 0.68 | 0.830142 |
Target: 5'- gUCGUCUCuGUCgUGuUCGCGGCGGCgGc -3' miRNA: 3'- gGGCAGAGcCAG-GC-AGUGCCGCUGgC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 170925 | 0.67 | 0.837803 |
Target: 5'- gUCUGUCUCGuGUCCuucuuUCGcCGGCGcGCCGc -3' miRNA: 3'- -GGGCAGAGC-CAGGc----AGU-GCCGC-UGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 127199 | 0.67 | 0.837803 |
Target: 5'- gCCC-UCggggacgUGGUUCGggaGCGGCGGCCGc -3' miRNA: 3'- -GGGcAGa------GCCAGGCag-UGCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 91789 | 0.67 | 0.837803 |
Target: 5'- aUCGUC---GUCCGcCAUGGCGACCu -3' miRNA: 3'- gGGCAGagcCAGGCaGUGCCGCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 172228 | 0.67 | 0.837803 |
Target: 5'- cCCCGUCg-GGUccucCCGUCACGaaCGGCCc -3' miRNA: 3'- -GGGCAGagCCA----GGCAGUGCc-GCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 187907 | 0.67 | 0.837803 |
Target: 5'- cCCCGUCgugcgccaaaaCGGUCaCGUaCGuCGGCG-CCGg -3' miRNA: 3'- -GGGCAGa----------GCCAG-GCA-GU-GCCGCuGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 200878 | 0.67 | 0.845305 |
Target: 5'- aUCGauucagggCUCGGcugcCCGUCGCgcugGGCGACCGg -3' miRNA: 3'- gGGCa-------GAGCCa---GGCAGUG----CCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 37877 | 0.67 | 0.845305 |
Target: 5'- uCgCGUCagcgCGGaaggCCGUC-UGGCGGCCGu -3' miRNA: 3'- -GgGCAGa---GCCa---GGCAGuGCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 22406 | 0.67 | 0.845305 |
Target: 5'- gCUGUCccUGGUcaCCGUCGUGGCGAUCGu -3' miRNA: 3'- gGGCAGa-GCCA--GGCAGUGCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 199502 | 0.67 | 0.845305 |
Target: 5'- -aCGUCUCu-UCCcaCGCGGCGGCCGc -3' miRNA: 3'- ggGCAGAGccAGGcaGUGCCGCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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