miRNA display CGI


Results 61 - 80 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 67715 0.67 0.852642
Target:  5'- aCCG--UCGGUaucgCCGUgACGaGCGACCGc -3'
miRNA:   3'- gGGCagAGCCA----GGCAgUGC-CGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 208037 0.67 0.859809
Target:  5'- aCCGUCggcgUGG-CCGUgGCGGCccucACCGu -3'
miRNA:   3'- gGGCAGa---GCCaGGCAgUGCCGc---UGGC- -5'
16189 3' -59.7 NC_004065.1 + 189056 0.67 0.859809
Target:  5'- gCCGUCUCGaUCU-UCugGGUGuCCGg -3'
miRNA:   3'- gGGCAGAGCcAGGcAGugCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 199230 0.67 0.866799
Target:  5'- aCCGUC-C-GUCCGUCAgucgucaucguCGGCGuCCGc -3'
miRNA:   3'- gGGCAGaGcCAGGCAGU-----------GCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 55777 0.67 0.87361
Target:  5'- gCgGUCUCGGcgCCGagcaggcgaUCGCGGCugacGACCa -3'
miRNA:   3'- gGgCAGAGCCa-GGC---------AGUGCCG----CUGGc -5'
16189 3' -59.7 NC_004065.1 + 67201 0.67 0.87361
Target:  5'- aCCGUCUgGGgacggagaUCCc-CACGGUGAUCGa -3'
miRNA:   3'- gGGCAGAgCC--------AGGcaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 182633 0.67 0.87361
Target:  5'- aCUCGcUCUCGuG-CCG--ACGGCGGCCGc -3'
miRNA:   3'- -GGGC-AGAGC-CaGGCagUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 161724 0.67 0.87361
Target:  5'- aCCGUCUCGaaGUCCGUCGCcGa-GCCc -3'
miRNA:   3'- gGGCAGAGC--CAGGCAGUGcCgcUGGc -5'
16189 3' -59.7 NC_004065.1 + 150503 0.67 0.87361
Target:  5'- uCCCG-CUCGG-CCGUgCGuaccuCGGCGAUgGg -3'
miRNA:   3'- -GGGCaGAGCCaGGCA-GU-----GCCGCUGgC- -5'
16189 3' -59.7 NC_004065.1 + 93787 0.66 0.879582
Target:  5'- uCCCGUCgUCGGUggaggagaccuucCCaGcCcCGGCGACUGg -3'
miRNA:   3'- -GGGCAG-AGCCA-------------GG-CaGuGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 110573 0.66 0.880236
Target:  5'- gUCCGcCagGcGUCgGUCuCGGCGACCa -3'
miRNA:   3'- -GGGCaGagC-CAGgCAGuGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 13164 0.66 0.880236
Target:  5'- aCCGUCaaacCGGUgagaaaCCGUacaGCGGCGuCCGu -3'
miRNA:   3'- gGGCAGa---GCCA------GGCAg--UGCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 216872 0.66 0.880236
Target:  5'- aCCgGUUUgaCGGUCguUCGCGGCGGCgCGa -3'
miRNA:   3'- -GGgCAGA--GCCAGgcAGUGCCGCUG-GC- -5'
16189 3' -59.7 NC_004065.1 + 125848 0.66 0.880236
Target:  5'- aCgGUCguaucCGGcaCCGaaGCGGCGACCGa -3'
miRNA:   3'- gGgCAGa----GCCa-GGCagUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 200942 0.66 0.880236
Target:  5'- cUCCGcCUCGGagCGcagggagCGCGGCGGCUc -3'
miRNA:   3'- -GGGCaGAGCCagGCa------GUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 161918 0.66 0.880236
Target:  5'- aCUCGUCUCGaGUcaCCGUC-CGuaGCGACuCGg -3'
miRNA:   3'- -GGGCAGAGC-CA--GGCAGuGC--CGCUG-GC- -5'
16189 3' -59.7 NC_004065.1 + 110283 0.66 0.886039
Target:  5'- uCCCGUgguacucgcgcgaCcCGG-CCGUCACGGUcucgcagcucuGGCCGg -3'
miRNA:   3'- -GGGCA-------------GaGCCaGGCAGUGCCG-----------CUGGC- -5'
16189 3' -59.7 NC_004065.1 + 185191 0.66 0.886039
Target:  5'- gCCCGUgUCGcuGUCCGugUCGCGGUGGuggcgcggagaauCCGu -3'
miRNA:   3'- -GGGCAgAGC--CAGGC--AGUGCCGCU-------------GGC- -5'
16189 3' -59.7 NC_004065.1 + 192379 0.66 0.886674
Target:  5'- uCCUGg--UGGgcUUCGUCACGGUGAUCGc -3'
miRNA:   3'- -GGGCagaGCC--AGGCAGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 98686 0.66 0.89292
Target:  5'- uCCCGaUCgaCGGgacCCGUCAUGGgGACg- -3'
miRNA:   3'- -GGGC-AGa-GCCa--GGCAGUGCCgCUGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.