miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 67201 0.67 0.87361
Target:  5'- aCCGUCUgGGgacggagaUCCc-CACGGUGAUCGa -3'
miRNA:   3'- gGGCAGAgCC--------AGGcaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 150503 0.67 0.87361
Target:  5'- uCCCG-CUCGG-CCGUgCGuaccuCGGCGAUgGg -3'
miRNA:   3'- -GGGCaGAGCCaGGCA-GU-----GCCGCUGgC- -5'
16189 3' -59.7 NC_004065.1 + 182633 0.67 0.87361
Target:  5'- aCUCGcUCUCGuG-CCG--ACGGCGGCCGc -3'
miRNA:   3'- -GGGC-AGAGC-CaGGCagUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 55777 0.67 0.87361
Target:  5'- gCgGUCUCGGcgCCGagcaggcgaUCGCGGCugacGACCa -3'
miRNA:   3'- gGgCAGAGCCa-GGC---------AGUGCCG----CUGGc -5'
16189 3' -59.7 NC_004065.1 + 161724 0.67 0.87361
Target:  5'- aCCGUCUCGaaGUCCGUCGCcGa-GCCc -3'
miRNA:   3'- gGGCAGAGC--CAGGCAGUGcCgcUGGc -5'
16189 3' -59.7 NC_004065.1 + 199230 0.67 0.866799
Target:  5'- aCCGUC-C-GUCCGUCAgucgucaucguCGGCGuCCGc -3'
miRNA:   3'- gGGCAGaGcCAGGCAGU-----------GCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 208037 0.67 0.859809
Target:  5'- aCCGUCggcgUGG-CCGUgGCGGCccucACCGu -3'
miRNA:   3'- gGGCAGa---GCCaGGCAgUGCCGc---UGGC- -5'
16189 3' -59.7 NC_004065.1 + 189056 0.67 0.859809
Target:  5'- gCCGUCUCGaUCU-UCugGGUGuCCGg -3'
miRNA:   3'- gGGCAGAGCcAGGcAGugCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 67715 0.67 0.852642
Target:  5'- aCCG--UCGGUaucgCCGUgACGaGCGACCGc -3'
miRNA:   3'- gGGCagAGCCA----GGCAgUGC-CGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 199502 0.67 0.845305
Target:  5'- -aCGUCUCu-UCCcaCGCGGCGGCCGc -3'
miRNA:   3'- ggGCAGAGccAGGcaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 22406 0.67 0.845305
Target:  5'- gCUGUCccUGGUcaCCGUCGUGGCGAUCGu -3'
miRNA:   3'- gGGCAGa-GCCA--GGCAGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 200878 0.67 0.845305
Target:  5'- aUCGauucagggCUCGGcugcCCGUCGCgcugGGCGACCGg -3'
miRNA:   3'- gGGCa-------GAGCCa---GGCAGUG----CCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 37877 0.67 0.845305
Target:  5'- uCgCGUCagcgCGGaaggCCGUC-UGGCGGCCGu -3'
miRNA:   3'- -GgGCAGa---GCCa---GGCAGuGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 170925 0.67 0.837803
Target:  5'- gUCUGUCUCGuGUCCuucuuUCGcCGGCGcGCCGc -3'
miRNA:   3'- -GGGCAGAGC-CAGGc----AGU-GCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 172228 0.67 0.837803
Target:  5'- cCCCGUCg-GGUccucCCGUCACGaaCGGCCc -3'
miRNA:   3'- -GGGCAGagCCA----GGCAGUGCc-GCUGGc -5'
16189 3' -59.7 NC_004065.1 + 127199 0.67 0.837803
Target:  5'- gCCC-UCggggacgUGGUUCGggaGCGGCGGCCGc -3'
miRNA:   3'- -GGGcAGa------GCCAGGCag-UGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 91789 0.67 0.837803
Target:  5'- aUCGUC---GUCCGcCAUGGCGACCu -3'
miRNA:   3'- gGGCAGagcCAGGCaGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 187907 0.67 0.837803
Target:  5'- cCCCGUCgugcgccaaaaCGGUCaCGUaCGuCGGCG-CCGg -3'
miRNA:   3'- -GGGCAGa----------GCCAG-GCA-GU-GCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 131242 0.68 0.830142
Target:  5'- --gGUCUCGGucgucUCCGUgGCGGCGGaCGu -3'
miRNA:   3'- gggCAGAGCC-----AGGCAgUGCCGCUgGC- -5'
16189 3' -59.7 NC_004065.1 + 154000 0.68 0.830142
Target:  5'- gUCGUCUCuGUCgUGuUCGCGGCGGCgGc -3'
miRNA:   3'- gGGCAGAGcCAG-GC-AGUGCCGCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.