Results 81 - 89 of 89 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 16189 | 3' | -59.7 | NC_004065.1 | + | 147469 | 0.73 | 0.559547 |
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Target: 5'- uCCaCGUCUgCGG-CCG-CAUGGUGGCCGu -3' miRNA: 3'- -GG-GCAGA-GCCaGGCaGUGCCGCUGGC- -5' |
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| 16189 | 3' | -59.7 | NC_004065.1 | + | 12634 | 0.73 | 0.541075 |
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Target: 5'- -aCGUCgCGGUUCGaCACGGCGaACCGc -3' miRNA: 3'- ggGCAGaGCCAGGCaGUGCCGC-UGGC- -5' |
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| 16189 | 3' | -59.7 | NC_004065.1 | + | 65212 | 0.73 | 0.531915 |
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Target: 5'- aCCGcCUCGGguugaccCCGaagagCACGGCGACCu -3' miRNA: 3'- gGGCaGAGCCa------GGCa----GUGCCGCUGGc -5' |
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| 16189 | 3' | -59.7 | NC_004065.1 | + | 34639 | 0.74 | 0.486162 |
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Target: 5'- gCCGUggaagacCUCGG-CCGUCACGGUGuCCa -3' miRNA: 3'- gGGCA-------GAGCCaGGCAGUGCCGCuGGc -5' |
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| 16189 | 3' | -59.7 | NC_004065.1 | + | 169555 | 0.74 | 0.473058 |
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Target: 5'- gCCGUCUCGGUuucugcgcgcuguugCCGcugUCGCGGCuccGGCCGg -3' miRNA: 3'- gGGCAGAGCCA---------------GGC---AGUGCCG---CUGGC- -5' |
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| 16189 | 3' | -59.7 | NC_004065.1 | + | 208932 | 0.74 | 0.469594 |
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Target: 5'- -aCGUCUC--UCCGUCGUGGCGGCCGa -3' miRNA: 3'- ggGCAGAGccAGGCAGUGCCGCUGGC- -5' |
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| 16189 | 3' | -59.7 | NC_004065.1 | + | 22061 | 0.79 | 0.271523 |
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Target: 5'- uCCC-UC-CGGUCgGUCGCGGCGGCCc -3' miRNA: 3'- -GGGcAGaGCCAGgCAGUGCCGCUGGc -5' |
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| 16189 | 3' | -59.7 | NC_004065.1 | + | 114815 | 0.8 | 0.232514 |
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Target: 5'- gCCCGg--CGGUaugccCCGUCGCGGCGGCCa -3' miRNA: 3'- -GGGCagaGCCA-----GGCAGUGCCGCUGGc -5' |
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| 16189 | 3' | -59.7 | NC_004065.1 | + | 188602 | 0.99 | 0.014031 |
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Target: 5'- cCCCGUCUCGGUCCGUCACGG-GACCGu -3' miRNA: 3'- -GGGCAGAGCCAGGCAGUGCCgCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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