miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 12634 0.73 0.541075
Target:  5'- -aCGUCgCGGUUCGaCACGGCGaACCGc -3'
miRNA:   3'- ggGCAGaGCCAGGCaGUGCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 13164 0.66 0.880236
Target:  5'- aCCGUCaaacCGGUgagaaaCCGUacaGCGGCGuCCGu -3'
miRNA:   3'- gGGCAGa---GCCA------GGCAg--UGCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 21135 0.73 0.559547
Target:  5'- gCCCGgagaaCUCaGUCCGUCACcGCGcACCGu -3'
miRNA:   3'- -GGGCa----GAGcCAGGCAGUGcCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 22061 0.79 0.271523
Target:  5'- uCCC-UC-CGGUCgGUCGCGGCGGCCc -3'
miRNA:   3'- -GGGcAGaGCCAGgCAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 22406 0.67 0.845305
Target:  5'- gCUGUCccUGGUcaCCGUCGUGGCGAUCGu -3'
miRNA:   3'- gGGCAGa-GCCA--GGCAGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 23731 0.69 0.763855
Target:  5'- gUCCGUC-CGGUCCGUC-CGaucCGAUCa -3'
miRNA:   3'- -GGGCAGaGCCAGGCAGuGCc--GCUGGc -5'
16189 3' -59.7 NC_004065.1 + 26402 0.69 0.772564
Target:  5'- cCCCGcCUCcaacUCCGcCACGGCGGCgGc -3'
miRNA:   3'- -GGGCaGAGcc--AGGCaGUGCCGCUGgC- -5'
16189 3' -59.7 NC_004065.1 + 27643 0.69 0.772564
Target:  5'- gCCCGUCUCGuGcgcgaUGUcUugGGUGACCGg -3'
miRNA:   3'- -GGGCAGAGC-Cag---GCA-GugCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 34639 0.74 0.486162
Target:  5'- gCCGUggaagacCUCGG-CCGUCACGGUGuCCa -3'
miRNA:   3'- gGGCA-------GAGCCaGGCAGUGCCGCuGGc -5'
16189 3' -59.7 NC_004065.1 + 37877 0.67 0.845305
Target:  5'- uCgCGUCagcgCGGaaggCCGUC-UGGCGGCCGu -3'
miRNA:   3'- -GgGCAGa---GCCa---GGCAGuGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 41045 0.7 0.718958
Target:  5'- gCCGcagagCUCGGgCCG-CGCGGCGACg- -3'
miRNA:   3'- gGGCa----GAGCCaGGCaGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 45285 0.71 0.653633
Target:  5'- uUCUG-CUCGGaaUCCGagccgaGCGGCGACCGa -3'
miRNA:   3'- -GGGCaGAGCC--AGGCag----UGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 50273 0.71 0.647968
Target:  5'- gCCCGaUUCGGgccccgagaccgccgUCCG-CGCGGCGAUCGc -3'
miRNA:   3'- -GGGCaGAGCC---------------AGGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 54256 0.68 0.789654
Target:  5'- aUCGUCaUCuc-CCGUC-CGGCGACCGg -3'
miRNA:   3'- gGGCAG-AGccaGGCAGuGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 55777 0.67 0.87361
Target:  5'- gCgGUCUCGGcgCCGagcaggcgaUCGCGGCugacGACCa -3'
miRNA:   3'- gGgCAGAGCCa-GGC---------AGUGCCG----CUGGc -5'
16189 3' -59.7 NC_004065.1 + 57389 0.71 0.663064
Target:  5'- cUCCGgagCUCGcGgUCGUCACGGCGGCa- -3'
miRNA:   3'- -GGGCa--GAGC-CaGGCAGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 59712 0.7 0.728093
Target:  5'- gCCGag-CGG-CCGcggcgCACGGCGACCGu -3'
miRNA:   3'- gGGCagaGCCaGGCa----GUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 65212 0.73 0.531915
Target:  5'- aCCGcCUCGGguugaccCCGaagagCACGGCGACCu -3'
miRNA:   3'- gGGCaGAGCCa------GGCa----GUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 65922 0.68 0.822326
Target:  5'- cCCCgGUCUCGGUuaCCGUCGCcguaccaucGGCaGACg- -3'
miRNA:   3'- -GGG-CAGAGCCA--GGCAGUG---------CCG-CUGgc -5'
16189 3' -59.7 NC_004065.1 + 67201 0.67 0.87361
Target:  5'- aCCGUCUgGGgacggagaUCCc-CACGGUGAUCGa -3'
miRNA:   3'- gGGCAGAgCC--------AGGcaGUGCCGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.