miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 67715 0.67 0.852642
Target:  5'- aCCG--UCGGUaucgCCGUgACGaGCGACCGc -3'
miRNA:   3'- gGGCagAGCCA----GGCAgUGC-CGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 74646 0.7 0.6912
Target:  5'- aCCCGggUCUgaGGUCCGgacCGCGGCGcguccGCCGu -3'
miRNA:   3'- -GGGC--AGAg-CCAGGCa--GUGCCGC-----UGGC- -5'
16189 3' -59.7 NC_004065.1 + 83279 0.68 0.789654
Target:  5'- aCUCGaC-CGG-CC-UCGCGGCGGCCGa -3'
miRNA:   3'- -GGGCaGaGCCaGGcAGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 84072 0.7 0.681854
Target:  5'- gCCGauggCUCGGauccugccgaCCGUCAgGGCGGCCa -3'
miRNA:   3'- gGGCa---GAGCCa---------GGCAGUgCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 91789 0.67 0.837803
Target:  5'- aUCGUC---GUCCGcCAUGGCGACCu -3'
miRNA:   3'- gGGCAGagcCAGGCaGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 93787 0.66 0.879582
Target:  5'- uCCCGUCgUCGGUggaggagaccuucCCaGcCcCGGCGACUGg -3'
miRNA:   3'- -GGGCAG-AGCCA-------------GG-CaGuGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 98596 0.66 0.898971
Target:  5'- gCCGUCUcuugacgcCGGUCCGcagCAUGGUuucGCCGc -3'
miRNA:   3'- gGGCAGA--------GCCAGGCa--GUGCCGc--UGGC- -5'
16189 3' -59.7 NC_004065.1 + 98686 0.66 0.89292
Target:  5'- uCCCGaUCgaCGGgacCCGUCAUGGgGACg- -3'
miRNA:   3'- -GGGC-AGa-GCCa--GGCAGUGCCgCUGgc -5'
16189 3' -59.7 NC_004065.1 + 99549 0.7 0.709759
Target:  5'- uCCCGUCUCG--CCGcgGCGGaCGGCCGu -3'
miRNA:   3'- -GGGCAGAGCcaGGCagUGCC-GCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 102970 0.66 0.904824
Target:  5'- uUCCG-CgCGGUaguaGUCGCGGCGcCCGc -3'
miRNA:   3'- -GGGCaGaGCCAgg--CAGUGCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 106247 0.7 0.709759
Target:  5'- -aCGcCUgGGUCCGaCA-GGCGACCGg -3'
miRNA:   3'- ggGCaGAgCCAGGCaGUgCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 106596 0.68 0.814363
Target:  5'- gCCCGUCUC--UCCGg-ACGGUGcGCCGa -3'
miRNA:   3'- -GGGCAGAGccAGGCagUGCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 107511 0.69 0.763855
Target:  5'- aCCG-CUCgcacgaggaGGUgCG-CGCGGCGACCGc -3'
miRNA:   3'- gGGCaGAG---------CCAgGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 109909 0.72 0.596967
Target:  5'- uCCCGgCUC-GUCCGcCGCGGCcGCCGu -3'
miRNA:   3'- -GGGCaGAGcCAGGCaGUGCCGcUGGC- -5'
16189 3' -59.7 NC_004065.1 + 110283 0.66 0.886039
Target:  5'- uCCCGUgguacucgcgcgaCcCGG-CCGUCACGGUcucgcagcucuGGCCGg -3'
miRNA:   3'- -GGGCA-------------GaGCCaGGCAGUGCCG-----------CUGGC- -5'
16189 3' -59.7 NC_004065.1 + 110573 0.66 0.880236
Target:  5'- gUCCGcCagGcGUCgGUCuCGGCGACCa -3'
miRNA:   3'- -GGGCaGagC-CAGgCAGuGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 111381 0.66 0.904824
Target:  5'- uCCCGcUCUCaccagCCagGUCAUGcGCGACCGg -3'
miRNA:   3'- -GGGC-AGAGcca--GG--CAGUGC-CGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 111901 0.66 0.904824
Target:  5'- aCCGcaacCUC-GUCCG-CGCGGCGACg- -3'
miRNA:   3'- gGGCa---GAGcCAGGCaGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 112895 0.71 0.672473
Target:  5'- gCCCGUCUCcGUCCGgaUCAgGuGCGACa- -3'
miRNA:   3'- -GGGCAGAGcCAGGC--AGUgC-CGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 114815 0.8 0.232514
Target:  5'- gCCCGg--CGGUaugccCCGUCGCGGCGGCCa -3'
miRNA:   3'- -GGGCagaGCCA-----GGCAGUGCCGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.