miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 168017 0.69 0.746145
Target:  5'- aCgCGUCUCGGgCCGguucuguguUCGCGGgGGCUGc -3'
miRNA:   3'- -GgGCAGAGCCaGGC---------AGUGCCgCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 168971 0.7 0.709759
Target:  5'- gCC-UCUCGGugUCCGUCagcGCGGCgGACCu -3'
miRNA:   3'- gGGcAGAGCC--AGGCAG---UGCCG-CUGGc -5'
16189 3' -59.7 NC_004065.1 + 169555 0.74 0.473058
Target:  5'- gCCGUCUCGGUuucugcgcgcuguugCCGcugUCGCGGCuccGGCCGg -3'
miRNA:   3'- gGGCAGAGCCA---------------GGC---AGUGCCG---CUGGC- -5'
16189 3' -59.7 NC_004065.1 + 170925 0.67 0.837803
Target:  5'- gUCUGUCUCGuGUCCuucuuUCGcCGGCGcGCCGc -3'
miRNA:   3'- -GGGCAGAGC-CAGGc----AGU-GCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 172158 0.66 0.904824
Target:  5'- cCCCGUC-CGcuuuUCagaaGUCugGGCGaACCGu -3'
miRNA:   3'- -GGGCAGaGCc---AGg---CAGugCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 172228 0.67 0.837803
Target:  5'- cCCCGUCg-GGUccucCCGUCACGaaCGGCCc -3'
miRNA:   3'- -GGGCAGagCCA----GGCAGUGCc-GCUGGc -5'
16189 3' -59.7 NC_004065.1 + 174912 0.7 0.700504
Target:  5'- aCUGUCUCGGcgCCGcCGCGgGCG-CCa -3'
miRNA:   3'- gGGCAGAGCCa-GGCaGUGC-CGCuGGc -5'
16189 3' -59.7 NC_004065.1 + 182633 0.67 0.87361
Target:  5'- aCUCGcUCUCGuG-CCG--ACGGCGGCCGc -3'
miRNA:   3'- -GGGC-AGAGC-CaGGCagUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 184169 0.68 0.789654
Target:  5'- cUCCGUCggagCGGccaUCgCGUCcCGuGCGGCCGg -3'
miRNA:   3'- -GGGCAGa---GCC---AG-GCAGuGC-CGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 185191 0.66 0.886039
Target:  5'- gCCCGUgUCGcuGUCCGugUCGCGGUGGuggcgcggagaauCCGu -3'
miRNA:   3'- -GGGCAgAGC--CAGGC--AGUGCCGCU-------------GGC- -5'
16189 3' -59.7 NC_004065.1 + 186952 0.69 0.746145
Target:  5'- aCCGUCcgaacgugCGGUCUGUCGCGcCGACg- -3'
miRNA:   3'- gGGCAGa-------GCCAGGCAGUGCcGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 187907 0.67 0.837803
Target:  5'- cCCCGUCgugcgccaaaaCGGUCaCGUaCGuCGGCG-CCGg -3'
miRNA:   3'- -GGGCAGa----------GCCAG-GCA-GU-GCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 188602 0.99 0.014031
Target:  5'- cCCCGUCUCGGUCCGUCACGG-GACCGu -3'
miRNA:   3'- -GGGCAGAGCCAGGCAGUGCCgCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 189056 0.67 0.859809
Target:  5'- gCCGUCUCGaUCU-UCugGGUGuCCGg -3'
miRNA:   3'- gGGCAGAGCcAGGcAGugCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 190017 0.66 0.89292
Target:  5'- aCCCGUCUCGGgaaguaauagCGUUgGCGGCGguguacagacACCGu -3'
miRNA:   3'- -GGGCAGAGCCag--------GCAG-UGCCGC----------UGGC- -5'
16189 3' -59.7 NC_004065.1 + 192379 0.66 0.886674
Target:  5'- uCCUGg--UGGgcUUCGUCACGGUGAUCGc -3'
miRNA:   3'- -GGGCagaGCC--AGGCAGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 194438 0.68 0.806259
Target:  5'- cCCCGggcgcCUCGGUCgaagCGguugggCACGGCGgcGCCGc -3'
miRNA:   3'- -GGGCa----GAGCCAG----GCa-----GUGCCGC--UGGC- -5'
16189 3' -59.7 NC_004065.1 + 194855 0.68 0.789654
Target:  5'- aUCGuUUUCGGUgCCaggaGUCACGGCGAUCu -3'
miRNA:   3'- gGGC-AGAGCCA-GG----CAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 197706 0.68 0.822326
Target:  5'- -aCGUC-CGacgCCGUCGCGGCcGCCGu -3'
miRNA:   3'- ggGCAGaGCca-GGCAGUGCCGcUGGC- -5'
16189 3' -59.7 NC_004065.1 + 199230 0.67 0.866799
Target:  5'- aCCGUC-C-GUCCGUCAgucgucaucguCGGCGuCCGc -3'
miRNA:   3'- gGGCAGaGcCAGGCAGU-----------GCCGCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.