Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 216872 | 0.66 | 0.880236 |
Target: 5'- aCCgGUUUgaCGGUCguUCGCGGCGGCgCGa -3' miRNA: 3'- -GGgCAGA--GCCAGgcAGUGCCGCUG-GC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 212051 | 0.72 | 0.60639 |
Target: 5'- aCCCaagagGUCgcgCGGcagacggacgaCCGUCACGGCGACCu -3' miRNA: 3'- -GGG-----CAGa--GCCa----------GGCAGUGCCGCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 211547 | 0.7 | 0.717123 |
Target: 5'- cCCCGUCgUUGGUaccuucuucuggcCCGUCGaggaaucCGGCGGCUGu -3' miRNA: 3'- -GGGCAG-AGCCA-------------GGCAGU-------GCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 208932 | 0.74 | 0.469594 |
Target: 5'- -aCGUCUC--UCCGUCGUGGCGGCCGa -3' miRNA: 3'- ggGCAGAGccAGGCAGUGCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 208037 | 0.67 | 0.859809 |
Target: 5'- aCCGUCggcgUGG-CCGUgGCGGCccucACCGu -3' miRNA: 3'- gGGCAGa---GCCaGGCAgUGCCGc---UGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 201199 | 0.7 | 0.728093 |
Target: 5'- uCCCGgCUCGGg-CGgCGCGGCGACg- -3' miRNA: 3'- -GGGCaGAGCCagGCaGUGCCGCUGgc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 200942 | 0.66 | 0.880236 |
Target: 5'- cUCCGcCUCGGagCGcagggagCGCGGCGGCUc -3' miRNA: 3'- -GGGCaGAGCCagGCa------GUGCCGCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 200878 | 0.67 | 0.845305 |
Target: 5'- aUCGauucagggCUCGGcugcCCGUCGCgcugGGCGACCGg -3' miRNA: 3'- gGGCa-------GAGCCa---GGCAGUG----CCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 199502 | 0.67 | 0.845305 |
Target: 5'- -aCGUCUCu-UCCcaCGCGGCGGCCGc -3' miRNA: 3'- ggGCAGAGccAGGcaGUGCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 199230 | 0.67 | 0.866799 |
Target: 5'- aCCGUC-C-GUCCGUCAgucgucaucguCGGCGuCCGc -3' miRNA: 3'- gGGCAGaGcCAGGCAGU-----------GCCGCuGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 197706 | 0.68 | 0.822326 |
Target: 5'- -aCGUC-CGacgCCGUCGCGGCcGCCGu -3' miRNA: 3'- ggGCAGaGCca-GGCAGUGCCGcUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 194855 | 0.68 | 0.789654 |
Target: 5'- aUCGuUUUCGGUgCCaggaGUCACGGCGAUCu -3' miRNA: 3'- gGGC-AGAGCCA-GG----CAGUGCCGCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 194438 | 0.68 | 0.806259 |
Target: 5'- cCCCGggcgcCUCGGUCgaagCGguugggCACGGCGgcGCCGc -3' miRNA: 3'- -GGGCa----GAGCCAG----GCa-----GUGCCGC--UGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 192379 | 0.66 | 0.886674 |
Target: 5'- uCCUGg--UGGgcUUCGUCACGGUGAUCGc -3' miRNA: 3'- -GGGCagaGCC--AGGCAGUGCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 190017 | 0.66 | 0.89292 |
Target: 5'- aCCCGUCUCGGgaaguaauagCGUUgGCGGCGguguacagacACCGu -3' miRNA: 3'- -GGGCAGAGCCag--------GCAG-UGCCGC----------UGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 189056 | 0.67 | 0.859809 |
Target: 5'- gCCGUCUCGaUCU-UCugGGUGuCCGg -3' miRNA: 3'- gGGCAGAGCcAGGcAGugCCGCuGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 188602 | 0.99 | 0.014031 |
Target: 5'- cCCCGUCUCGGUCCGUCACGG-GACCGu -3' miRNA: 3'- -GGGCAGAGCCAGGCAGUGCCgCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 187907 | 0.67 | 0.837803 |
Target: 5'- cCCCGUCgugcgccaaaaCGGUCaCGUaCGuCGGCG-CCGg -3' miRNA: 3'- -GGGCAGa----------GCCAG-GCA-GU-GCCGCuGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 186952 | 0.69 | 0.746145 |
Target: 5'- aCCGUCcgaacgugCGGUCUGUCGCGcCGACg- -3' miRNA: 3'- gGGCAGa-------GCCAGGCAGUGCcGCUGgc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 185191 | 0.66 | 0.886039 |
Target: 5'- gCCCGUgUCGcuGUCCGugUCGCGGUGGuggcgcggagaauCCGu -3' miRNA: 3'- -GGGCAgAGC--CAGGC--AGUGCCGCU-------------GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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