miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 184169 0.68 0.789654
Target:  5'- cUCCGUCggagCGGccaUCgCGUCcCGuGCGGCCGg -3'
miRNA:   3'- -GGGCAGa---GCC---AG-GCAGuGC-CGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 182633 0.67 0.87361
Target:  5'- aCUCGcUCUCGuG-CCG--ACGGCGGCCGc -3'
miRNA:   3'- -GGGC-AGAGC-CaGGCagUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 174912 0.7 0.700504
Target:  5'- aCUGUCUCGGcgCCGcCGCGgGCG-CCa -3'
miRNA:   3'- gGGCAGAGCCa-GGCaGUGC-CGCuGGc -5'
16189 3' -59.7 NC_004065.1 + 172228 0.67 0.837803
Target:  5'- cCCCGUCg-GGUccucCCGUCACGaaCGGCCc -3'
miRNA:   3'- -GGGCAGagCCA----GGCAGUGCc-GCUGGc -5'
16189 3' -59.7 NC_004065.1 + 172158 0.66 0.904824
Target:  5'- cCCCGUC-CGcuuuUCagaaGUCugGGCGaACCGu -3'
miRNA:   3'- -GGGCAGaGCc---AGg---CAGugCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 170925 0.67 0.837803
Target:  5'- gUCUGUCUCGuGUCCuucuuUCGcCGGCGcGCCGc -3'
miRNA:   3'- -GGGCAGAGC-CAGGc----AGU-GCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 169555 0.74 0.473058
Target:  5'- gCCGUCUCGGUuucugcgcgcuguugCCGcugUCGCGGCuccGGCCGg -3'
miRNA:   3'- gGGCAGAGCCA---------------GGC---AGUGCCG---CUGGC- -5'
16189 3' -59.7 NC_004065.1 + 168971 0.7 0.709759
Target:  5'- gCC-UCUCGGugUCCGUCagcGCGGCgGACCu -3'
miRNA:   3'- gGGcAGAGCC--AGGCAG---UGCCG-CUGGc -5'
16189 3' -59.7 NC_004065.1 + 168017 0.69 0.746145
Target:  5'- aCgCGUCUCGGgCCGguucuguguUCGCGGgGGCUGc -3'
miRNA:   3'- -GgGCAGAGCCaGGC---------AGUGCCgCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 163482 0.69 0.746145
Target:  5'- cUCCGUCggCGGcgCCgGUgGCGGCGGCUu -3'
miRNA:   3'- -GGGCAGa-GCCa-GG-CAgUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 162294 0.69 0.763855
Target:  5'- gCUCGUgaaCgagCGGUCgcuCGUCACGGCGAuaCCGa -3'
miRNA:   3'- -GGGCA---Ga--GCCAG---GCAGUGCCGCU--GGC- -5'
16189 3' -59.7 NC_004065.1 + 162239 0.66 0.904824
Target:  5'- gCCCGaCUUGGaCgaaGUCugGGCGcCCGc -3'
miRNA:   3'- -GGGCaGAGCCaGg--CAGugCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 161918 0.66 0.880236
Target:  5'- aCUCGUCUCGaGUcaCCGUC-CGuaGCGACuCGg -3'
miRNA:   3'- -GGGCAGAGC-CA--GGCAGuGC--CGCUG-GC- -5'
16189 3' -59.7 NC_004065.1 + 161724 0.67 0.87361
Target:  5'- aCCGUCUCGaaGUCCGUCGCcGa-GCCc -3'
miRNA:   3'- gGGCAGAGC--CAGGCAGUGcCgcUGGc -5'
16189 3' -59.7 NC_004065.1 + 159940 0.71 0.653633
Target:  5'- gCUCGUCgccucggGGUCCGcgccuuugaggaUCGCGGCGAUCGu -3'
miRNA:   3'- -GGGCAGag-----CCAGGC------------AGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 157715 0.66 0.898971
Target:  5'- aCCGUCg-GGaccgCgGUCGCGGCGAUg- -3'
miRNA:   3'- gGGCAGagCCa---GgCAGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 154000 0.68 0.830142
Target:  5'- gUCGUCUCuGUCgUGuUCGCGGCGGCgGc -3'
miRNA:   3'- gGGCAGAGcCAG-GC-AGUGCCGCUGgC- -5'
16189 3' -59.7 NC_004065.1 + 152066 0.69 0.763855
Target:  5'- -gCGUCUCGGggcucgaCGUCACGuaGAUCGa -3'
miRNA:   3'- ggGCAGAGCCag-----GCAGUGCcgCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 151349 0.69 0.755046
Target:  5'- aCUCGcUCUCGGg-CGcCGCGGCG-CCGg -3'
miRNA:   3'- -GGGC-AGAGCCagGCaGUGCCGCuGGC- -5'
16189 3' -59.7 NC_004065.1 + 150503 0.67 0.87361
Target:  5'- uCCCG-CUCGG-CCGUgCGuaccuCGGCGAUgGg -3'
miRNA:   3'- -GGGCaGAGCCaGGCA-GU-----GCCGCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.