miRNA display CGI


Results 41 - 60 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 148999 0.66 0.898971
Target:  5'- -gCGUCUCGaGcuUCUGcUGCGGCGAUCGg -3'
miRNA:   3'- ggGCAGAGC-C--AGGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 148685 0.69 0.763855
Target:  5'- gUCCGUgUUGGUCuucggCGgaaCACGGCGAuCCGg -3'
miRNA:   3'- -GGGCAgAGCCAG-----GCa--GUGCCGCU-GGC- -5'
16189 3' -59.7 NC_004065.1 + 147469 0.73 0.559547
Target:  5'- uCCaCGUCUgCGG-CCG-CAUGGUGGCCGu -3'
miRNA:   3'- -GG-GCAGA-GCCaGGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 131242 0.68 0.830142
Target:  5'- --gGUCUCGGucgucUCCGUgGCGGCGGaCGu -3'
miRNA:   3'- gggCAGAGCC-----AGGCAgUGCCGCUgGC- -5'
16189 3' -59.7 NC_004065.1 + 127199 0.67 0.837803
Target:  5'- gCCC-UCggggacgUGGUUCGggaGCGGCGGCCGc -3'
miRNA:   3'- -GGGcAGa------GCCAGGCag-UGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 125848 0.66 0.880236
Target:  5'- aCgGUCguaucCGGcaCCGaaGCGGCGACCGa -3'
miRNA:   3'- gGgCAGa----GCCa-GGCagUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 118168 0.71 0.653633
Target:  5'- aCCG-CggcggCGG-CCGUCACGGCuGCCGc -3'
miRNA:   3'- gGGCaGa----GCCaGGCAGUGCCGcUGGC- -5'
16189 3' -59.7 NC_004065.1 + 117716 0.68 0.806259
Target:  5'- aCCCGUCacccUCGcGUCUcUCGCGcGCGcACCGu -3'
miRNA:   3'- -GGGCAG----AGC-CAGGcAGUGC-CGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 115899 0.68 0.79802
Target:  5'- cUCUGcggCUCGGggCCGUCGuCGGCcucGGCCGg -3'
miRNA:   3'- -GGGCa--GAGCCa-GGCAGU-GCCG---CUGGC- -5'
16189 3' -59.7 NC_004065.1 + 114815 0.8 0.232514
Target:  5'- gCCCGg--CGGUaugccCCGUCGCGGCGGCCa -3'
miRNA:   3'- -GGGCagaGCCA-----GGCAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 112895 0.71 0.672473
Target:  5'- gCCCGUCUCcGUCCGgaUCAgGuGCGACa- -3'
miRNA:   3'- -GGGCAGAGcCAGGC--AGUgC-CGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 111901 0.66 0.904824
Target:  5'- aCCGcaacCUC-GUCCG-CGCGGCGACg- -3'
miRNA:   3'- gGGCa---GAGcCAGGCaGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 111381 0.66 0.904824
Target:  5'- uCCCGcUCUCaccagCCagGUCAUGcGCGACCGg -3'
miRNA:   3'- -GGGC-AGAGcca--GG--CAGUGC-CGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 110573 0.66 0.880236
Target:  5'- gUCCGcCagGcGUCgGUCuCGGCGACCa -3'
miRNA:   3'- -GGGCaGagC-CAGgCAGuGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 110283 0.66 0.886039
Target:  5'- uCCCGUgguacucgcgcgaCcCGG-CCGUCACGGUcucgcagcucuGGCCGg -3'
miRNA:   3'- -GGGCA-------------GaGCCaGGCAGUGCCG-----------CUGGC- -5'
16189 3' -59.7 NC_004065.1 + 109909 0.72 0.596967
Target:  5'- uCCCGgCUC-GUCCGcCGCGGCcGCCGu -3'
miRNA:   3'- -GGGCaGAGcCAGGCaGUGCCGcUGGC- -5'
16189 3' -59.7 NC_004065.1 + 107511 0.69 0.763855
Target:  5'- aCCG-CUCgcacgaggaGGUgCG-CGCGGCGACCGc -3'
miRNA:   3'- gGGCaGAG---------CCAgGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 106596 0.68 0.814363
Target:  5'- gCCCGUCUC--UCCGg-ACGGUGcGCCGa -3'
miRNA:   3'- -GGGCAGAGccAGGCagUGCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 106247 0.7 0.709759
Target:  5'- -aCGcCUgGGUCCGaCA-GGCGACCGg -3'
miRNA:   3'- ggGCaGAgCCAGGCaGUgCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 102970 0.66 0.904824
Target:  5'- uUCCG-CgCGGUaguaGUCGCGGCGcCCGc -3'
miRNA:   3'- -GGGCaGaGCCAgg--CAGUGCCGCuGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.