miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 148685 0.69 0.763855
Target:  5'- gUCCGUgUUGGUCuucggCGgaaCACGGCGAuCCGg -3'
miRNA:   3'- -GGGCAgAGCCAG-----GCa--GUGCCGCU-GGC- -5'
16189 3' -59.7 NC_004065.1 + 74646 0.7 0.6912
Target:  5'- aCCCGggUCUgaGGUCCGgacCGCGGCGcguccGCCGu -3'
miRNA:   3'- -GGGC--AGAg-CCAGGCa--GUGCCGC-----UGGC- -5'
16189 3' -59.7 NC_004065.1 + 99549 0.7 0.709759
Target:  5'- uCCCGUCUCG--CCGcgGCGGaCGGCCGu -3'
miRNA:   3'- -GGGCAGAGCcaGGCagUGCC-GCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 41045 0.7 0.718958
Target:  5'- gCCGcagagCUCGGgCCG-CGCGGCGACg- -3'
miRNA:   3'- gGGCa----GAGCCaGGCaGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 59712 0.7 0.728093
Target:  5'- gCCGag-CGG-CCGcggcgCACGGCGACCGu -3'
miRNA:   3'- gGGCagaGCCaGGCa----GUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 201199 0.7 0.728093
Target:  5'- uCCCGgCUCGGg-CGgCGCGGCGACg- -3'
miRNA:   3'- -GGGCaGAGCCagGCaGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 163482 0.69 0.746145
Target:  5'- cUCCGUCggCGGcgCCgGUgGCGGCGGCUu -3'
miRNA:   3'- -GGGCAGa-GCCa-GG-CAgUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 168017 0.69 0.746145
Target:  5'- aCgCGUCUCGGgCCGguucuguguUCGCGGgGGCUGc -3'
miRNA:   3'- -GgGCAGAGCCaGGC---------AGUGCCgCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 23731 0.69 0.763855
Target:  5'- gUCCGUC-CGGUCCGUC-CGaucCGAUCa -3'
miRNA:   3'- -GGGCAGaGCCAGGCAGuGCc--GCUGGc -5'
16189 3' -59.7 NC_004065.1 + 112895 0.71 0.672473
Target:  5'- gCCCGUCUCcGUCCGgaUCAgGuGCGACa- -3'
miRNA:   3'- -GGGCAGAGcCAGGC--AGUgC-CGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 57389 0.71 0.663064
Target:  5'- cUCCGgagCUCGcGgUCGUCACGGCGGCa- -3'
miRNA:   3'- -GGGCa--GAGC-CaGGCAGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 118168 0.71 0.653633
Target:  5'- aCCG-CggcggCGG-CCGUCACGGCuGCCGc -3'
miRNA:   3'- gGGCaGa----GCCaGGCAGUGCCGcUGGC- -5'
16189 3' -59.7 NC_004065.1 + 22061 0.79 0.271523
Target:  5'- uCCC-UC-CGGUCgGUCGCGGCGGCCc -3'
miRNA:   3'- -GGGcAGaGCCAGgCAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 208932 0.74 0.469594
Target:  5'- -aCGUCUC--UCCGUCGUGGCGGCCGa -3'
miRNA:   3'- ggGCAGAGccAGGCAGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 169555 0.74 0.473058
Target:  5'- gCCGUCUCGGUuucugcgcgcuguugCCGcugUCGCGGCuccGGCCGg -3'
miRNA:   3'- gGGCAGAGCCA---------------GGC---AGUGCCG---CUGGC- -5'
16189 3' -59.7 NC_004065.1 + 65212 0.73 0.531915
Target:  5'- aCCGcCUCGGguugaccCCGaagagCACGGCGACCu -3'
miRNA:   3'- gGGCaGAGCCa------GGCa----GUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 12634 0.73 0.541075
Target:  5'- -aCGUCgCGGUUCGaCACGGCGaACCGc -3'
miRNA:   3'- ggGCAGaGCCAGGCaGUGCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 147469 0.73 0.559547
Target:  5'- uCCaCGUCUgCGG-CCG-CAUGGUGGCCGu -3'
miRNA:   3'- -GG-GCAGA-GCCaGGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 109909 0.72 0.596967
Target:  5'- uCCCGgCUC-GUCCGcCGCGGCcGCCGu -3'
miRNA:   3'- -GGGCaGAGcCAGGCaGUGCCGcUGGC- -5'
16189 3' -59.7 NC_004065.1 + 50273 0.71 0.647968
Target:  5'- gCCCGaUUCGGgccccgagaccgccgUCCG-CGCGGCGAUCGc -3'
miRNA:   3'- -GGGCaGAGCC---------------AGGCaGUGCCGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.