Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16189 | 3' | -59.7 | NC_004065.1 | + | 26402 | 0.69 | 0.772564 |
Target: 5'- cCCCGcCUCcaacUCCGcCACGGCGGCgGc -3' miRNA: 3'- -GGGCaGAGcc--AGGCaGUGCCGCUGgC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 162294 | 0.69 | 0.763855 |
Target: 5'- gCUCGUgaaCgagCGGUCgcuCGUCACGGCGAuaCCGa -3' miRNA: 3'- -GGGCA---Ga--GCCAG---GCAGUGCCGCU--GGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 148685 | 0.69 | 0.763855 |
Target: 5'- gUCCGUgUUGGUCuucggCGgaaCACGGCGAuCCGg -3' miRNA: 3'- -GGGCAgAGCCAG-----GCa--GUGCCGCU-GGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 23731 | 0.69 | 0.763855 |
Target: 5'- gUCCGUC-CGGUCCGUC-CGaucCGAUCa -3' miRNA: 3'- -GGGCAGaGCCAGGCAGuGCc--GCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 168017 | 0.69 | 0.746145 |
Target: 5'- aCgCGUCUCGGgCCGguucuguguUCGCGGgGGCUGc -3' miRNA: 3'- -GgGCAGAGCCaGGC---------AGUGCCgCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 163482 | 0.69 | 0.746145 |
Target: 5'- cUCCGUCggCGGcgCCgGUgGCGGCGGCUu -3' miRNA: 3'- -GGGCAGa-GCCa-GG-CAgUGCCGCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 201199 | 0.7 | 0.728093 |
Target: 5'- uCCCGgCUCGGg-CGgCGCGGCGACg- -3' miRNA: 3'- -GGGCaGAGCCagGCaGUGCCGCUGgc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 59712 | 0.7 | 0.728093 |
Target: 5'- gCCGag-CGG-CCGcggcgCACGGCGACCGu -3' miRNA: 3'- gGGCagaGCCaGGCa----GUGCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 41045 | 0.7 | 0.718958 |
Target: 5'- gCCGcagagCUCGGgCCG-CGCGGCGACg- -3' miRNA: 3'- gGGCa----GAGCCaGGCaGUGCCGCUGgc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 99549 | 0.7 | 0.709759 |
Target: 5'- uCCCGUCUCG--CCGcgGCGGaCGGCCGu -3' miRNA: 3'- -GGGCAGAGCcaGGCagUGCC-GCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 84072 | 0.7 | 0.681854 |
Target: 5'- gCCGauggCUCGGauccugccgaCCGUCAgGGCGGCCa -3' miRNA: 3'- gGGCa---GAGCCa---------GGCAGUgCCGCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 174912 | 0.7 | 0.700504 |
Target: 5'- aCUGUCUCGGcgCCGcCGCGgGCG-CCa -3' miRNA: 3'- gGGCAGAGCCa-GGCaGUGC-CGCuGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 106247 | 0.7 | 0.709759 |
Target: 5'- -aCGcCUgGGUCCGaCA-GGCGACCGg -3' miRNA: 3'- ggGCaGAgCCAGGCaGUgCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 168971 | 0.7 | 0.709759 |
Target: 5'- gCC-UCUCGGugUCCGUCagcGCGGCgGACCu -3' miRNA: 3'- gGGcAGAGCC--AGGCAG---UGCCG-CUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 159940 | 0.71 | 0.653633 |
Target: 5'- gCUCGUCgccucggGGUCCGcgccuuugaggaUCGCGGCGAUCGu -3' miRNA: 3'- -GGGCAGag-----CCAGGC------------AGUGCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 45285 | 0.71 | 0.653633 |
Target: 5'- uUCUG-CUCGGaaUCCGagccgaGCGGCGACCGa -3' miRNA: 3'- -GGGCaGAGCC--AGGCag----UGCCGCUGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 212051 | 0.72 | 0.60639 |
Target: 5'- aCCCaagagGUCgcgCGGcagacggacgaCCGUCACGGCGACCu -3' miRNA: 3'- -GGG-----CAGa--GCCa----------GGCAGUGCCGCUGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 21135 | 0.73 | 0.559547 |
Target: 5'- gCCCGgagaaCUCaGUCCGUCACcGCGcACCGu -3' miRNA: 3'- -GGGCa----GAGcCAGGCAGUGcCGC-UGGC- -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 34639 | 0.74 | 0.486162 |
Target: 5'- gCCGUggaagacCUCGG-CCGUCACGGUGuCCa -3' miRNA: 3'- gGGCA-------GAGCCaGGCAGUGCCGCuGGc -5' |
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16189 | 3' | -59.7 | NC_004065.1 | + | 111901 | 0.66 | 0.904824 |
Target: 5'- aCCGcaacCUC-GUCCG-CGCGGCGACg- -3' miRNA: 3'- gGGCa---GAGcCAGGCaGUGCCGCUGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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