miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 114815 0.8 0.232514
Target:  5'- gCCCGg--CGGUaugccCCGUCGCGGCGGCCa -3'
miRNA:   3'- -GGGCagaGCCA-----GGCAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 194855 0.68 0.789654
Target:  5'- aUCGuUUUCGGUgCCaggaGUCACGGCGAUCu -3'
miRNA:   3'- gGGC-AGAGCCA-GG----CAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 117716 0.68 0.806259
Target:  5'- aCCCGUCacccUCGcGUCUcUCGCGcGCGcACCGu -3'
miRNA:   3'- -GGGCAG----AGC-CAGGcAGUGC-CGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 111901 0.66 0.904824
Target:  5'- aCCGcaacCUC-GUCCG-CGCGGCGACg- -3'
miRNA:   3'- gGGCa---GAGcCAGGCaGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 45285 0.71 0.653633
Target:  5'- uUCUG-CUCGGaaUCCGagccgaGCGGCGACCGa -3'
miRNA:   3'- -GGGCaGAGCC--AGGCag----UGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 159940 0.71 0.653633
Target:  5'- gCUCGUCgccucggGGUCCGcgccuuugaggaUCGCGGCGAUCGu -3'
miRNA:   3'- -GGGCAGag-----CCAGGC------------AGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 174912 0.7 0.700504
Target:  5'- aCUGUCUCGGcgCCGcCGCGgGCG-CCa -3'
miRNA:   3'- gGGCAGAGCCa-GGCaGUGC-CGCuGGc -5'
16189 3' -59.7 NC_004065.1 + 106247 0.7 0.709759
Target:  5'- -aCGcCUgGGUCCGaCA-GGCGACCGg -3'
miRNA:   3'- ggGCaGAgCCAGGCaGUgCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 186952 0.69 0.746145
Target:  5'- aCCGUCcgaacgugCGGUCUGUCGCGcCGACg- -3'
miRNA:   3'- gGGCAGa-------GCCAGGCAGUGCcGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 184169 0.68 0.789654
Target:  5'- cUCCGUCggagCGGccaUCgCGUCcCGuGCGGCCGg -3'
miRNA:   3'- -GGGCAGa---GCC---AG-GCAGuGC-CGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 152066 0.69 0.763855
Target:  5'- -gCGUCUCGGggcucgaCGUCACGuaGAUCGa -3'
miRNA:   3'- ggGCAGAGCCag-----GCAGUGCcgCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 211547 0.7 0.717123
Target:  5'- cCCCGUCgUUGGUaccuucuucuggcCCGUCGaggaaucCGGCGGCUGu -3'
miRNA:   3'- -GGGCAG-AGCCA-------------GGCAGU-------GCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 34639 0.74 0.486162
Target:  5'- gCCGUggaagacCUCGG-CCGUCACGGUGuCCa -3'
miRNA:   3'- gGGCA-------GAGCCaGGCAGUGCCGCuGGc -5'
16189 3' -59.7 NC_004065.1 + 107511 0.69 0.763855
Target:  5'- aCCG-CUCgcacgaggaGGUgCG-CGCGGCGACCGc -3'
miRNA:   3'- gGGCaGAG---------CCAgGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 21135 0.73 0.559547
Target:  5'- gCCCGgagaaCUCaGUCCGUCACcGCGcACCGu -3'
miRNA:   3'- -GGGCa----GAGcCAGGCAGUGcCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 168971 0.7 0.709759
Target:  5'- gCC-UCUCGGugUCCGUCagcGCGGCgGACCu -3'
miRNA:   3'- gGGcAGAGCC--AGGCAG---UGCCG-CUGGc -5'
16189 3' -59.7 NC_004065.1 + 27643 0.69 0.772564
Target:  5'- gCCCGUCUCGuGcgcgaUGUcUugGGUGACCGg -3'
miRNA:   3'- -GGGCAGAGC-Cag---GCA-GugCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 115899 0.68 0.79802
Target:  5'- cUCUGcggCUCGGggCCGUCGuCGGCcucGGCCGg -3'
miRNA:   3'- -GGGCa--GAGCCa-GGCAGU-GCCG---CUGGC- -5'
16189 3' -59.7 NC_004065.1 + 212051 0.72 0.60639
Target:  5'- aCCCaagagGUCgcgCGGcagacggacgaCCGUCACGGCGACCu -3'
miRNA:   3'- -GGG-----CAGa--GCCa----------GGCAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 84072 0.7 0.681854
Target:  5'- gCCGauggCUCGGauccugccgaCCGUCAgGGCGGCCa -3'
miRNA:   3'- gGGCa---GAGCCa---------GGCAGUgCCGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.