miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 107511 0.69 0.763855
Target:  5'- aCCG-CUCgcacgaggaGGUgCG-CGCGGCGACCGc -3'
miRNA:   3'- gGGCaGAG---------CCAgGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 212051 0.72 0.60639
Target:  5'- aCCCaagagGUCgcgCGGcagacggacgaCCGUCACGGCGACCu -3'
miRNA:   3'- -GGG-----CAGa--GCCa----------GGCAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 185191 0.66 0.886039
Target:  5'- gCCCGUgUCGcuGUCCGugUCGCGGUGGuggcgcggagaauCCGu -3'
miRNA:   3'- -GGGCAgAGC--CAGGC--AGUGCCGCU-------------GGC- -5'
16189 3' -59.7 NC_004065.1 + 208037 0.67 0.859809
Target:  5'- aCCGUCggcgUGG-CCGUgGCGGCccucACCGu -3'
miRNA:   3'- gGGCAGa---GCCaGGCAgUGCCGc---UGGC- -5'
16189 3' -59.7 NC_004065.1 + 194855 0.68 0.789654
Target:  5'- aUCGuUUUCGGUgCCaggaGUCACGGCGAUCu -3'
miRNA:   3'- gGGC-AGAGCCA-GG----CAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 21135 0.73 0.559547
Target:  5'- gCCCGgagaaCUCaGUCCGUCACcGCGcACCGu -3'
miRNA:   3'- -GGGCa----GAGcCAGGCAGUGcCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 67715 0.67 0.852642
Target:  5'- aCCG--UCGGUaucgCCGUgACGaGCGACCGc -3'
miRNA:   3'- gGGCagAGCCA----GGCAgUGC-CGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 34639 0.74 0.486162
Target:  5'- gCCGUggaagacCUCGG-CCGUCACGGUGuCCa -3'
miRNA:   3'- gGGCA-------GAGCCaGGCAGUGCCGCuGGc -5'
16189 3' -59.7 NC_004065.1 + 114815 0.8 0.232514
Target:  5'- gCCCGg--CGGUaugccCCGUCGCGGCGGCCa -3'
miRNA:   3'- -GGGCagaGCCA-----GGCAGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 211547 0.7 0.717123
Target:  5'- cCCCGUCgUUGGUaccuucuucuggcCCGUCGaggaaucCGGCGGCUGu -3'
miRNA:   3'- -GGGCAG-AGCCA-------------GGCAGU-------GCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 115899 0.68 0.79802
Target:  5'- cUCUGcggCUCGGggCCGUCGuCGGCcucGGCCGg -3'
miRNA:   3'- -GGGCa--GAGCCa-GGCAGU-GCCG---CUGGC- -5'
16189 3' -59.7 NC_004065.1 + 111901 0.66 0.904824
Target:  5'- aCCGcaacCUC-GUCCG-CGCGGCGACg- -3'
miRNA:   3'- gGGCa---GAGcCAGGCaGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 37877 0.67 0.845305
Target:  5'- uCgCGUCagcgCGGaaggCCGUC-UGGCGGCCGu -3'
miRNA:   3'- -GgGCAGa---GCCa---GGCAGuGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 182633 0.67 0.87361
Target:  5'- aCUCGcUCUCGuG-CCG--ACGGCGGCCGc -3'
miRNA:   3'- -GGGC-AGAGC-CaGGCagUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 125848 0.66 0.880236
Target:  5'- aCgGUCguaucCGGcaCCGaaGCGGCGACCGa -3'
miRNA:   3'- gGgCAGa----GCCa-GGCagUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 98686 0.66 0.89292
Target:  5'- uCCCGaUCgaCGGgacCCGUCAUGGgGACg- -3'
miRNA:   3'- -GGGC-AGa-GCCa--GGCAGUGCCgCUGgc -5'
16189 3' -59.7 NC_004065.1 + 186952 0.69 0.746145
Target:  5'- aCCGUCcgaacgugCGGUCUGUCGCGcCGACg- -3'
miRNA:   3'- gGGCAGa-------GCCAGGCAGUGCcGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 45285 0.71 0.653633
Target:  5'- uUCUG-CUCGGaaUCCGagccgaGCGGCGACCGa -3'
miRNA:   3'- -GGGCaGAGCC--AGGCag----UGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 174912 0.7 0.700504
Target:  5'- aCUGUCUCGGcgCCGcCGCGgGCG-CCa -3'
miRNA:   3'- gGGCAGAGCCa-GGCaGUGC-CGCuGGc -5'
16189 3' -59.7 NC_004065.1 + 154000 0.68 0.830142
Target:  5'- gUCGUCUCuGUCgUGuUCGCGGCGGCgGc -3'
miRNA:   3'- gGGCAGAGcCAG-GC-AGUGCCGCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.