miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 3' -59.7 NC_004065.1 + 111381 0.66 0.904824
Target:  5'- uCCCGcUCUCaccagCCagGUCAUGcGCGACCGg -3'
miRNA:   3'- -GGGC-AGAGcca--GG--CAGUGC-CGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 172158 0.66 0.904824
Target:  5'- cCCCGUC-CGcuuuUCagaaGUCugGGCGaACCGu -3'
miRNA:   3'- -GGGCAGaGCc---AGg---CAGugCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 208932 0.74 0.469594
Target:  5'- -aCGUCUC--UCCGUCGUGGCGGCCGa -3'
miRNA:   3'- ggGCAGAGccAGGCAGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 147469 0.73 0.559547
Target:  5'- uCCaCGUCUgCGG-CCG-CAUGGUGGCCGu -3'
miRNA:   3'- -GG-GCAGA-GCCaGGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 91789 0.67 0.837803
Target:  5'- aUCGUC---GUCCGcCAUGGCGACCu -3'
miRNA:   3'- gGGCAGagcCAGGCaGUGCCGCUGGc -5'
16189 3' -59.7 NC_004065.1 + 12634 0.73 0.541075
Target:  5'- -aCGUCgCGGUUCGaCACGGCGaACCGc -3'
miRNA:   3'- ggGCAGaGCCAGGCaGUGCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 54256 0.68 0.789654
Target:  5'- aUCGUCaUCuc-CCGUC-CGGCGACCGg -3'
miRNA:   3'- gGGCAG-AGccaGGCAGuGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 148999 0.66 0.898971
Target:  5'- -gCGUCUCGaGcuUCUGcUGCGGCGAUCGg -3'
miRNA:   3'- ggGCAGAGC-C--AGGCaGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 194438 0.68 0.806259
Target:  5'- cCCCGggcgcCUCGGUCgaagCGguugggCACGGCGgcGCCGc -3'
miRNA:   3'- -GGGCa----GAGCCAG----GCa-----GUGCCGC--UGGC- -5'
16189 3' -59.7 NC_004065.1 + 106596 0.68 0.814363
Target:  5'- gCCCGUCUC--UCCGg-ACGGUGcGCCGa -3'
miRNA:   3'- -GGGCAGAGccAGGCagUGCCGC-UGGC- -5'
16189 3' -59.7 NC_004065.1 + 197706 0.68 0.822326
Target:  5'- -aCGUC-CGacgCCGUCGCGGCcGCCGu -3'
miRNA:   3'- ggGCAGaGCca-GGCAGUGCCGcUGGC- -5'
16189 3' -59.7 NC_004065.1 + 131242 0.68 0.830142
Target:  5'- --gGUCUCGGucgucUCCGUgGCGGCGGaCGu -3'
miRNA:   3'- gggCAGAGCC-----AGGCAgUGCCGCUgGC- -5'
16189 3' -59.7 NC_004065.1 + 154000 0.68 0.830142
Target:  5'- gUCGUCUCuGUCgUGuUCGCGGCGGCgGc -3'
miRNA:   3'- gGGCAGAGcCAG-GC-AGUGCCGCUGgC- -5'
16189 3' -59.7 NC_004065.1 + 26402 0.69 0.772564
Target:  5'- cCCCGcCUCcaacUCCGcCACGGCGGCgGc -3'
miRNA:   3'- -GGGCaGAGcc--AGGCaGUGCCGCUGgC- -5'
16189 3' -59.7 NC_004065.1 + 83279 0.68 0.789654
Target:  5'- aCUCGaC-CGG-CC-UCGCGGCGGCCGa -3'
miRNA:   3'- -GGGCaGaGCCaGGcAGUGCCGCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 41045 0.7 0.718958
Target:  5'- gCCGcagagCUCGGgCCG-CGCGGCGACg- -3'
miRNA:   3'- gGGCa----GAGCCaGGCaGUGCCGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 99549 0.7 0.709759
Target:  5'- uCCCGUCUCG--CCGcgGCGGaCGGCCGu -3'
miRNA:   3'- -GGGCAGAGCcaGGCagUGCC-GCUGGC- -5'
16189 3' -59.7 NC_004065.1 + 74646 0.7 0.6912
Target:  5'- aCCCGggUCUgaGGUCCGgacCGCGGCGcguccGCCGu -3'
miRNA:   3'- -GGGC--AGAg-CCAGGCa--GUGCCGC-----UGGC- -5'
16189 3' -59.7 NC_004065.1 + 112895 0.71 0.672473
Target:  5'- gCCCGUCUCcGUCCGgaUCAgGuGCGACa- -3'
miRNA:   3'- -GGGCAGAGcCAGGC--AGUgC-CGCUGgc -5'
16189 3' -59.7 NC_004065.1 + 98596 0.66 0.898971
Target:  5'- gCCGUCUcuugacgcCGGUCCGcagCAUGGUuucGCCGc -3'
miRNA:   3'- gGGCAGA--------GCCAGGCa--GUGCCGc--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.