miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 198562 0.66 0.96969
Target:  5'- cGCGcGGCACGgACCGCugCAUGuCUu -3'
miRNA:   3'- cCGC-UCGUGCaUGGUGugGUGCuGGu -5'
16189 5' -55.9 NC_004065.1 + 117105 0.66 0.96969
Target:  5'- cGCGAGC--GUGCCGCGcCCugGugUc -3'
miRNA:   3'- cCGCUCGugCAUGGUGU-GGugCugGu -5'
16189 5' -55.9 NC_004065.1 + 178224 0.66 0.96969
Target:  5'- uGCGGGCGCGUGUCuCAuCCACuGCCu -3'
miRNA:   3'- cCGCUCGUGCAUGGuGU-GGUGcUGGu -5'
16189 5' -55.9 NC_004065.1 + 46659 0.66 0.96969
Target:  5'- cGGCGAGCGCGcucugcucgaUACUcuACACCGCcuaCAc -3'
miRNA:   3'- -CCGCUCGUGC----------AUGG--UGUGGUGcugGU- -5'
16189 5' -55.9 NC_004065.1 + 32006 0.66 0.96969
Target:  5'- cGGCGAcCGCG-ACCGCcuCCGaGGCCAu -3'
miRNA:   3'- -CCGCUcGUGCaUGGUGu-GGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 103070 0.66 0.96969
Target:  5'- aGGCGAucuucgGCACGUACUGCAaCAaGAUCGa -3'
miRNA:   3'- -CCGCU------CGUGCAUGGUGUgGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 179694 0.66 0.968826
Target:  5'- cGGCGguGGCcacGCGUGCCACcacucucuguuguuGCCucGCGAUCGc -3'
miRNA:   3'- -CCGC--UCG---UGCAUGGUG--------------UGG--UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 66129 0.66 0.966743
Target:  5'- aGGCGcuGGCGCGcuggGCCGCggaccggcGCCAgcUGGCCGa -3'
miRNA:   3'- -CCGC--UCGUGCa---UGGUG--------UGGU--GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 124917 0.66 0.966743
Target:  5'- aGCG-GCACGUcgucgGCCAC-CaCGCGcACCAg -3'
miRNA:   3'- cCGCuCGUGCA-----UGGUGuG-GUGC-UGGU- -5'
16189 5' -55.9 NC_004065.1 + 125061 0.66 0.966743
Target:  5'- aGUucGCAgGU-CCGCGCCACGaACCGu -3'
miRNA:   3'- cCGcuCGUgCAuGGUGUGGUGC-UGGU- -5'
16189 5' -55.9 NC_004065.1 + 163379 0.66 0.966743
Target:  5'- cGcCGGGCGCccACCGCGCCGaaGCCGa -3'
miRNA:   3'- cC-GCUCGUGcaUGGUGUGGUgcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 122404 0.66 0.966743
Target:  5'- aGCGAGaugcagACGUugCGCAUguCGAUCAg -3'
miRNA:   3'- cCGCUCg-----UGCAugGUGUGguGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 67849 0.66 0.966743
Target:  5'- --aGGGCACGgcgaagACCuGCGCCGCaGCCGg -3'
miRNA:   3'- ccgCUCGUGCa-----UGG-UGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 79296 0.66 0.966743
Target:  5'- gGGCGAGC-UGU-CgACgGCCugGGCCu -3'
miRNA:   3'- -CCGCUCGuGCAuGgUG-UGGugCUGGu -5'
16189 5' -55.9 NC_004065.1 + 123022 0.66 0.966743
Target:  5'- uGGCGGcCACGUACucgucagggaugCACGCgGCGAgCAu -3'
miRNA:   3'- -CCGCUcGUGCAUG------------GUGUGgUGCUgGU- -5'
16189 5' -55.9 NC_004065.1 + 27953 0.66 0.966743
Target:  5'- uGGUGcAGCACacgucccuGUACCuCGCCAUGGgCAa -3'
miRNA:   3'- -CCGC-UCGUG--------CAUGGuGUGGUGCUgGU- -5'
16189 5' -55.9 NC_004065.1 + 167924 0.66 0.966743
Target:  5'- cGCGAGCguaACG-ACCGCcgcuGCCGCuGCCGu -3'
miRNA:   3'- cCGCUCG---UGCaUGGUG----UGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 204111 0.66 0.966743
Target:  5'- cGGCGGgaaccugcGCAUGgccugGCC-CGCCGgGGCCGu -3'
miRNA:   3'- -CCGCU--------CGUGCa----UGGuGUGGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 120569 0.66 0.966743
Target:  5'- cGCGAGCggGCGggACCuccgGCGCCGgucuCGGCCGg -3'
miRNA:   3'- cCGCUCG--UGCa-UGG----UGUGGU----GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 199554 0.66 0.966743
Target:  5'- -cCGGGCGCGccCCAUcguGCCGCGGuCCAg -3'
miRNA:   3'- ccGCUCGUGCauGGUG---UGGUGCU-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.