miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 124917 0.66 0.966743
Target:  5'- aGCG-GCACGUcgucgGCCAC-CaCGCGcACCAg -3'
miRNA:   3'- cCGCuCGUGCA-----UGGUGuG-GUGC-UGGU- -5'
16189 5' -55.9 NC_004065.1 + 163379 0.66 0.966743
Target:  5'- cGcCGGGCGCccACCGCGCCGaaGCCGa -3'
miRNA:   3'- cC-GCUCGUGcaUGGUGUGGUgcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 66129 0.66 0.966743
Target:  5'- aGGCGcuGGCGCGcuggGCCGCggaccggcGCCAgcUGGCCGa -3'
miRNA:   3'- -CCGC--UCGUGCa---UGGUG--------UGGU--GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 124528 0.66 0.958147
Target:  5'- -uCGGGCACGUGCgC-CACCAgguggaacagcuccuCGGCCGc -3'
miRNA:   3'- ccGCUCGUGCAUG-GuGUGGU---------------GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 100591 0.66 0.960253
Target:  5'- cGCG-GCACGUACCGguCCGaGGCgCAc -3'
miRNA:   3'- cCGCuCGUGCAUGGUguGGUgCUG-GU- -5'
16189 5' -55.9 NC_004065.1 + 24272 0.66 0.956702
Target:  5'- cGGUGAGCucACGgcUCGCGgccCCGCGACa- -3'
miRNA:   3'- -CCGCUCG--UGCauGGUGU---GGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 125061 0.66 0.966743
Target:  5'- aGUucGCAgGU-CCGCGCCACGaACCGu -3'
miRNA:   3'- cCGcuCGUgCAuGGUGUGGUGC-UGGU- -5'
16189 5' -55.9 NC_004065.1 + 145130 0.66 0.963599
Target:  5'- aGGC-AGCACGcgaugGCCAUcguCCACGuCCGc -3'
miRNA:   3'- -CCGcUCGUGCa----UGGUGu--GGUGCuGGU- -5'
16189 5' -55.9 NC_004065.1 + 229266 0.66 0.963599
Target:  5'- aGGuCGAGCGCGaacCCGCGaCGCGGCa- -3'
miRNA:   3'- -CC-GCUCGUGCau-GGUGUgGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 97069 0.66 0.963599
Target:  5'- uGGCGAuggugauugcuGCugGUGCUGCugcugucuCCGCGACg- -3'
miRNA:   3'- -CCGCU-----------CGugCAUGGUGu-------GGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 201023 0.66 0.952939
Target:  5'- cGCGuGCGCGcggcGCCuCGCCACcGCCGc -3'
miRNA:   3'- cCGCuCGUGCa---UGGuGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 128407 0.66 0.952939
Target:  5'- gGGcCGAGCggcaGCGgcgGCgGCGCCGCcACCGa -3'
miRNA:   3'- -CC-GCUCG----UGCa--UGgUGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 122404 0.66 0.966743
Target:  5'- aGCGAGaugcagACGUugCGCAUguCGAUCAg -3'
miRNA:   3'- cCGCUCg-----UGCAugGUGUGguGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 92472 0.66 0.963599
Target:  5'- cGCG-GCgAUGUGCCGgGCCAgaggcUGACCGg -3'
miRNA:   3'- cCGCuCG-UGCAUGGUgUGGU-----GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 198316 0.66 0.963599
Target:  5'- cGGgGucGCACaUGCCGCGgaACGGCCAg -3'
miRNA:   3'- -CCgCu-CGUGcAUGGUGUggUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 117105 0.66 0.96969
Target:  5'- cGCGAGC--GUGCCGCGcCCugGugUc -3'
miRNA:   3'- cCGCUCGugCAUGGUGU-GGugCugGu -5'
16189 5' -55.9 NC_004065.1 + 67849 0.66 0.966743
Target:  5'- --aGGGCACGgcgaagACCuGCGCCGCaGCCGg -3'
miRNA:   3'- ccgCUCGUGCa-----UGG-UGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 109041 0.66 0.960253
Target:  5'- uGCGAGCGCuu-CCGCGgCAgGAUCGa -3'
miRNA:   3'- cCGCUCGUGcauGGUGUgGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 199554 0.66 0.966743
Target:  5'- -cCGGGCGCGccCCAUcguGCCGCGGuCCAg -3'
miRNA:   3'- ccGCUCGUGCauGGUG---UGGUGCU-GGU- -5'
16189 5' -55.9 NC_004065.1 + 203628 0.66 0.960253
Target:  5'- uGGCGAGCGCaacucucucGccaacacacCCACACCACGcauaucagcGCCAg -3'
miRNA:   3'- -CCGCUCGUG---------Cau-------GGUGUGGUGC---------UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.