miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 75854 0.66 0.956702
Target:  5'- cGGCGAGCcaGCaacaGCCGcCGCCGCcGCCGc -3'
miRNA:   3'- -CCGCUCG--UGca--UGGU-GUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 24272 0.66 0.956702
Target:  5'- cGGUGAGCucACGgcUCGCGgccCCGCGACa- -3'
miRNA:   3'- -CCGCUCG--UGCauGGUGU---GGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 201023 0.66 0.952939
Target:  5'- cGCGuGCGCGcggcGCCuCGCCACcGCCGc -3'
miRNA:   3'- cCGCuCGUGCa---UGGuGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 124528 0.66 0.958147
Target:  5'- -uCGGGCACGUGCgC-CACCAgguggaacagcuccuCGGCCGc -3'
miRNA:   3'- ccGCUCGUGCAUG-GuGUGGU---------------GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 94953 0.66 0.960253
Target:  5'- uGGCGcuGCGgGgcCCGCuCCGCGGCUg -3'
miRNA:   3'- -CCGCu-CGUgCauGGUGuGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 29041 0.66 0.963599
Target:  5'- cGGCGu-CGCG-ACCcguCACCACGcACCGa -3'
miRNA:   3'- -CCGCucGUGCaUGGu--GUGGUGC-UGGU- -5'
16189 5' -55.9 NC_004065.1 + 63183 0.66 0.963274
Target:  5'- uGGCGAGCugcuacaacgggaGCGaguuccaACCGCugCACGAUg- -3'
miRNA:   3'- -CCGCUCG-------------UGCa------UGGUGugGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 105034 0.66 0.952939
Target:  5'- cGUGAGCGCGcugcacgacCCGCGCCucUGGCCGc -3'
miRNA:   3'- cCGCUCGUGCau-------GGUGUGGu-GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 109041 0.66 0.960253
Target:  5'- uGCGAGCGCuu-CCGCGgCAgGAUCGa -3'
miRNA:   3'- cCGCUCGUGcauGGUGUgGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 100353 0.66 0.960253
Target:  5'- uGGCGuauAGCGCGgaagaugaGCCGguCgACGGCCAg -3'
miRNA:   3'- -CCGC---UCGUGCa-------UGGUguGgUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 190830 0.66 0.952939
Target:  5'- cGCGAcaccguGCGCGagaaauaACCACGCCGCcGCCGu -3'
miRNA:   3'- cCGCU------CGUGCa------UGGUGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 31078 0.67 0.948963
Target:  5'- cGCG-GCugGUgGCCACggGCgGCGAUCAg -3'
miRNA:   3'- cCGCuCGugCA-UGGUG--UGgUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 82863 0.67 0.948963
Target:  5'- uGGCGAagaGCAC--GCCGC-UCAUGGCCAc -3'
miRNA:   3'- -CCGCU---CGUGcaUGGUGuGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 87533 0.67 0.948963
Target:  5'- cGCGcAGCGCGUGCCAgACgGgGuuaGCCGc -3'
miRNA:   3'- cCGC-UCGUGCAUGGUgUGgUgC---UGGU- -5'
16189 5' -55.9 NC_004065.1 + 151359 0.67 0.94477
Target:  5'- gGGCGccgcGGCGCcgGCCGCugCgcugGCGGCCGa -3'
miRNA:   3'- -CCGC----UCGUGcaUGGUGugG----UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 72918 0.67 0.94477
Target:  5'- cGCGAGuCGCGccuCCGCGgC-CGGCCAa -3'
miRNA:   3'- cCGCUC-GUGCau-GGUGUgGuGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 63988 0.67 0.935724
Target:  5'- aGGCGucacAGCugGU-CCGCAUCAcCGACa- -3'
miRNA:   3'- -CCGC----UCGugCAuGGUGUGGU-GCUGgu -5'
16189 5' -55.9 NC_004065.1 + 196547 0.67 0.925788
Target:  5'- uGCcGGCGCGUAggCGC-CCACGGCCGc -3'
miRNA:   3'- cCGcUCGUGCAUg-GUGuGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 110843 0.67 0.940358
Target:  5'- uGCgGGGCGCGgGCCGC-CCGCGucgaACCGu -3'
miRNA:   3'- cCG-CUCGUGCaUGGUGuGGUGC----UGGU- -5'
16189 5' -55.9 NC_004065.1 + 199860 0.67 0.935724
Target:  5'- cGCaGGCACucgucgGUGCCGCACagcacgaGCGGCCGg -3'
miRNA:   3'- cCGcUCGUG------CAUGGUGUGg------UGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.