miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 189898 0.67 0.935724
Target:  5'- -aCGAGCGCGgagaucGCCAcCACCaauauaGCGGCCGc -3'
miRNA:   3'- ccGCUCGUGCa-----UGGU-GUGG------UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 41047 0.67 0.935724
Target:  5'- cGCaGAGCuCGgGCCGCGCgGCGACgAa -3'
miRNA:   3'- cCG-CUCGuGCaUGGUGUGgUGCUGgU- -5'
16189 5' -55.9 NC_004065.1 + 38764 0.67 0.935724
Target:  5'- cGCGAGUAcCGUuuCCACACCG-GGCUg -3'
miRNA:   3'- cCGCUCGU-GCAu-GGUGUGGUgCUGGu -5'
16189 5' -55.9 NC_004065.1 + 199860 0.67 0.935724
Target:  5'- cGCaGGCACucgucgGUGCCGCACagcacgaGCGGCCGg -3'
miRNA:   3'- cCGcUCGUG------CAUGGUGUGg------UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 21982 0.67 0.935724
Target:  5'- cGGUGAGgGCc-GCCACGgCCACG-CCGa -3'
miRNA:   3'- -CCGCUCgUGcaUGGUGU-GGUGCuGGU- -5'
16189 5' -55.9 NC_004065.1 + 24481 0.67 0.94477
Target:  5'- -aUGGGCGCGUagAUgGCACCGCcGCCGg -3'
miRNA:   3'- ccGCUCGUGCA--UGgUGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 126830 0.67 0.94477
Target:  5'- aGCGAcaaaGCGCGUGCUccuGgACC-CGACCGu -3'
miRNA:   3'- cCGCU----CGUGCAUGG---UgUGGuGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 63988 0.67 0.935724
Target:  5'- aGGCGucacAGCugGU-CCGCAUCAcCGACa- -3'
miRNA:   3'- -CCGC----UCGugCAuGGUGUGGU-GCUGgu -5'
16189 5' -55.9 NC_004065.1 + 163387 0.67 0.930868
Target:  5'- aGCGucAGCGCGUccgccacgcagcGCCGCAgcCCGCGGCUc -3'
miRNA:   3'- cCGC--UCGUGCA------------UGGUGU--GGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 82863 0.67 0.948963
Target:  5'- uGGCGAagaGCAC--GCCGC-UCAUGGCCAc -3'
miRNA:   3'- -CCGCU---CGUGcaUGGUGuGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 72918 0.67 0.94477
Target:  5'- cGCGAGuCGCGccuCCGCGgC-CGGCCAa -3'
miRNA:   3'- cCGCUC-GUGCau-GGUGUgGuGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 87533 0.67 0.948963
Target:  5'- cGCGcAGCGCGUGCCAgACgGgGuuaGCCGc -3'
miRNA:   3'- cCGC-UCGUGCAUGGUgUGgUgC---UGGU- -5'
16189 5' -55.9 NC_004065.1 + 33198 0.67 0.948963
Target:  5'- cGCccGCACcUGCCGCaggugACCACGACCc -3'
miRNA:   3'- cCGcuCGUGcAUGGUG-----UGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 179597 0.67 0.948963
Target:  5'- cGCGuGUGCG-ACCGCGCCuCGAgCGa -3'
miRNA:   3'- cCGCuCGUGCaUGGUGUGGuGCUgGU- -5'
16189 5' -55.9 NC_004065.1 + 199209 0.67 0.930868
Target:  5'- cGCGAGgACG---CGCACCGCGACg- -3'
miRNA:   3'- cCGCUCgUGCaugGUGUGGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 117015 0.67 0.925788
Target:  5'- aGGCGAuGCgcgcucACGUGCCgaccgagacgcuGCACCGCG-CCu -3'
miRNA:   3'- -CCGCU-CG------UGCAUGG------------UGUGGUGCuGGu -5'
16189 5' -55.9 NC_004065.1 + 121837 0.67 0.930868
Target:  5'- gGGCccuGCgACGU-CCGCACCcCGACCc -3'
miRNA:   3'- -CCGcu-CG-UGCAuGGUGUGGuGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 31078 0.67 0.948963
Target:  5'- cGCG-GCugGUgGCCACggGCgGCGAUCAg -3'
miRNA:   3'- cCGCuCGugCA-UGGUG--UGgUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 159068 0.67 0.948963
Target:  5'- cGCGAuCugG-ACCGacCGCCGCGACCc -3'
miRNA:   3'- cCGCUcGugCaUGGU--GUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 59779 0.67 0.94477
Target:  5'- cGGCGGcCACG-GCCACgauACCggggcaACGACCAa -3'
miRNA:   3'- -CCGCUcGUGCaUGGUG---UGG------UGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.