miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 188637 1.11 0.003665
Target:  5'- cGGCGAGCACGUACCACACCACGACCAg -3'
miRNA:   3'- -CCGCUCGUGCAUGGUGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 208344 0.8 0.341397
Target:  5'- cGCGGuCGCGUAUCugACCGCGACCGu -3'
miRNA:   3'- cCGCUcGUGCAUGGugUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 170080 0.79 0.385429
Target:  5'- uGGCGGGCACcacuccgggcuucugGCCGCGCCGCGACa- -3'
miRNA:   3'- -CCGCUCGUGca-------------UGGUGUGGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 203064 0.78 0.429602
Target:  5'- uGGCGAGCucCGgaGCC-CGCCGCGGCCGc -3'
miRNA:   3'- -CCGCUCGu-GCa-UGGuGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 96754 0.76 0.501526
Target:  5'- gGGCGAGCagggcgacgGCGgagGCgGCAUCGCGGCCGu -3'
miRNA:   3'- -CCGCUCG---------UGCa--UGgUGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 16452 0.76 0.501526
Target:  5'- aGCGAGCcCgGUACCACguucGCUACGACCGa -3'
miRNA:   3'- cCGCUCGuG-CAUGGUG----UGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 229363 0.75 0.588063
Target:  5'- aGCGAGCGgGUGCuCGCuACgCGCGGCCGg -3'
miRNA:   3'- cCGCUCGUgCAUG-GUG-UG-GUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 89809 0.74 0.597903
Target:  5'- cGGCG-GC-CGU-CUGCGCCGCGACCu -3'
miRNA:   3'- -CCGCuCGuGCAuGGUGUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 131545 0.74 0.607767
Target:  5'- cGGCGAGCACauGUACacgGCCAUGAUCAg -3'
miRNA:   3'- -CCGCUCGUG--CAUGgugUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 135208 0.74 0.637434
Target:  5'- gGGCGGGCAUGUaACCggaugcaugACACagcaGCGACCGu -3'
miRNA:   3'- -CCGCUCGUGCA-UGG---------UGUGg---UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 110691 0.74 0.647325
Target:  5'- uGGUGAGUgugACGUgaGCCGcCGCCGCGACUc -3'
miRNA:   3'- -CCGCUCG---UGCA--UGGU-GUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 129753 0.74 0.647325
Target:  5'- gGGCGAGCAgcUGUACCGCACgcguCACGAg-- -3'
miRNA:   3'- -CCGCUCGU--GCAUGGUGUG----GUGCUggu -5'
16189 5' -55.9 NC_004065.1 + 162465 0.74 0.647325
Target:  5'- cGGC-AGCGCGUGaagUACACCAgGACCGc -3'
miRNA:   3'- -CCGcUCGUGCAUg--GUGUGGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 120247 0.73 0.657204
Target:  5'- cGGCGuAGCGCcUGCC-CugCugGACCGg -3'
miRNA:   3'- -CCGC-UCGUGcAUGGuGugGugCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 171009 0.73 0.657204
Target:  5'- cGCGAGCACGaACCGCcgACCcUGGCCu -3'
miRNA:   3'- cCGCUCGUGCaUGGUG--UGGuGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 118822 0.73 0.661151
Target:  5'- uGGCGAGCGUGUcgacuguugguuuccACCGuCAuCCACGACCGc -3'
miRNA:   3'- -CCGCUCGUGCA---------------UGGU-GU-GGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 147400 0.73 0.667064
Target:  5'- -aCGAGCuGCGcuuCCACACCuACGACCAg -3'
miRNA:   3'- ccGCUCG-UGCau-GGUGUGG-UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 66582 0.73 0.676899
Target:  5'- uGGCGAGCGCcUGCCGCACgAUgGACgCGg -3'
miRNA:   3'- -CCGCUCGUGcAUGGUGUGgUG-CUG-GU- -5'
16189 5' -55.9 NC_004065.1 + 135389 0.73 0.686698
Target:  5'- cGGUGAcGCGCcgGCCGCGCC-CGACCc -3'
miRNA:   3'- -CCGCU-CGUGcaUGGUGUGGuGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 162603 0.73 0.686698
Target:  5'- uGCGGGUcgaacACGUAggucgccccCCGCGCCACGAUCAc -3'
miRNA:   3'- cCGCUCG-----UGCAU---------GGUGUGGUGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.