miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 132304 0.73 0.696456
Target:  5'- cGGCGAGCuguCGUGCCu--CCugGACa- -3'
miRNA:   3'- -CCGCUCGu--GCAUGGuguGGugCUGgu -5'
16189 5' -55.9 NC_004065.1 + 76738 0.73 0.696456
Target:  5'- cGGCGGGgACGggcGCgGCGCCGgCGGCCu -3'
miRNA:   3'- -CCGCUCgUGCa--UGgUGUGGU-GCUGGu -5'
16189 5' -55.9 NC_004065.1 + 202316 0.72 0.706163
Target:  5'- cGCGAGCACGgGCCagACGCC-CGAUCc -3'
miRNA:   3'- cCGCUCGUGCaUGG--UGUGGuGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 97947 0.72 0.715812
Target:  5'- cGGCGuGGCAgCGguggggACC-UACCGCGACCAg -3'
miRNA:   3'- -CCGC-UCGU-GCa-----UGGuGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 122208 0.72 0.715812
Target:  5'- cGGCGccuacaGGCugGUGgcCCGCucgcCCACGGCCAa -3'
miRNA:   3'- -CCGC------UCGugCAU--GGUGu---GGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 197576 0.72 0.725394
Target:  5'- uGGUGGGCAUGcgGCUGCGCUacuACGACCc -3'
miRNA:   3'- -CCGCUCGUGCa-UGGUGUGG---UGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 169957 0.72 0.725394
Target:  5'- -aCGAGCGCGgcCCGCGuCgCAUGACCAa -3'
miRNA:   3'- ccGCUCGUGCauGGUGU-G-GUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 106349 0.72 0.734901
Target:  5'- cGGCGcugcuGCACGggcAgCGCGCCACGugCGa -3'
miRNA:   3'- -CCGCu----CGUGCa--UgGUGUGGUGCugGU- -5'
16189 5' -55.9 NC_004065.1 + 646 0.72 0.744324
Target:  5'- gGGUGAGUGCGUccgGCCGCGCguaGCGAgCAc -3'
miRNA:   3'- -CCGCUCGUGCA---UGGUGUGg--UGCUgGU- -5'
16189 5' -55.9 NC_004065.1 + 69752 0.72 0.744324
Target:  5'- uGGCGaAGCACGcGCCggacauGCACgCGCGACUg -3'
miRNA:   3'- -CCGC-UCGUGCaUGG------UGUG-GUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 50332 0.72 0.744324
Target:  5'- uGGUG-GCACGcgugGCCAcCGCCGCGAUCc -3'
miRNA:   3'- -CCGCuCGUGCa---UGGU-GUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 130427 0.72 0.751797
Target:  5'- cGGCGgaauucgugcugcAGCAgcUGUGCCcccagaaccugacGCACCACGGCCGu -3'
miRNA:   3'- -CCGC-------------UCGU--GCAUGG-------------UGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 126693 0.72 0.752727
Target:  5'- gGGCGA-CACGUACUucgaccuACGCCugcgGCGACCGc -3'
miRNA:   3'- -CCGCUcGUGCAUGG-------UGUGG----UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 175475 0.72 0.753656
Target:  5'- uGCGAGCACGccCCAUcguCCACgGACCGu -3'
miRNA:   3'- cCGCUCGUGCauGGUGu--GGUG-CUGGU- -5'
16189 5' -55.9 NC_004065.1 + 163879 0.71 0.762888
Target:  5'- cGGCcAGCugGcGCCGguCCGCGGCCc -3'
miRNA:   3'- -CCGcUCGugCaUGGUguGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 128197 0.71 0.762888
Target:  5'- cGCGAGCAUuacuaGUGCCAguccCGCCACcGCCGa -3'
miRNA:   3'- cCGCUCGUG-----CAUGGU----GUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 195408 0.71 0.781017
Target:  5'- cGGCGAGCcguacACGUACgCuccCGCCGCGucGCCGu -3'
miRNA:   3'- -CCGCUCG-----UGCAUG-Gu--GUGGUGC--UGGU- -5'
16189 5' -55.9 NC_004065.1 + 98929 0.71 0.781017
Target:  5'- gGGCGAGCuGCGUACCGuugGCCagaGCGACg- -3'
miRNA:   3'- -CCGCUCG-UGCAUGGUg--UGG---UGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 29797 0.71 0.781017
Target:  5'- cGGCGGGC-CGuUACaCGCugCuCGGCCAg -3'
miRNA:   3'- -CCGCUCGuGC-AUG-GUGugGuGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 66846 0.71 0.781017
Target:  5'- aGGCGgagaGGUACGUGCCGggaaauCGCCgaACGACCu -3'
miRNA:   3'- -CCGC----UCGUGCAUGGU------GUGG--UGCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.