miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 75154 0.71 0.789899
Target:  5'- aGGCGAGCaggacgaagACGUGUCGCGUCAUGACCu -3'
miRNA:   3'- -CCGCUCG---------UGCAUGGUGUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 143124 0.71 0.789899
Target:  5'- cGcCGAGgGCGagACCgGCGCCGCGACCu -3'
miRNA:   3'- cC-GCUCgUGCa-UGG-UGUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 109868 0.71 0.797779
Target:  5'- -cCGGGCG-GUGCCACcggcgucGCCGCGGCCGc -3'
miRNA:   3'- ccGCUCGUgCAUGGUG-------UGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 77774 0.71 0.798647
Target:  5'- uGCGAGCugaugGCGUGCuCGUACCGCGACa- -3'
miRNA:   3'- cCGCUCG-----UGCAUG-GUGUGGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 90346 0.71 0.798647
Target:  5'- uGGCGuAGCACGUGugACAgCAgCGGCCGc -3'
miRNA:   3'- -CCGC-UCGUGCAUggUGUgGU-GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 102028 0.71 0.798647
Target:  5'- cGGCGGGCcaccuCGgugACC-CGCgGCGGCCGg -3'
miRNA:   3'- -CCGCUCGu----GCa--UGGuGUGgUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 207956 0.71 0.798647
Target:  5'- cGCGGGUugG-GCC--GCCGCGACCGa -3'
miRNA:   3'- cCGCUCGugCaUGGugUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 207796 0.71 0.807256
Target:  5'- gGGCGccGGCACGaugACgGuCAUCGCGACCGu -3'
miRNA:   3'- -CCGC--UCGUGCa--UGgU-GUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 163173 0.71 0.807256
Target:  5'- cGGCGAuuucaccgGCACGUACCucucCGCCuCGuACCGg -3'
miRNA:   3'- -CCGCU--------CGUGCAUGGu---GUGGuGC-UGGU- -5'
16189 5' -55.9 NC_004065.1 + 124467 0.71 0.807256
Target:  5'- cGGCGcGC-CGUGCCGCugCGCcggguccagGGCCGc -3'
miRNA:   3'- -CCGCuCGuGCAUGGUGugGUG---------CUGGU- -5'
16189 5' -55.9 NC_004065.1 + 114589 0.7 0.813193
Target:  5'- cGGCGgagugcccuacgagGGCugGUAUCGCccucGCUACGACCc -3'
miRNA:   3'- -CCGC--------------UCGugCAUGGUG----UGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 67155 0.7 0.815715
Target:  5'- aGUGGGCACGUAaucUACCGCGACgCAg -3'
miRNA:   3'- cCGCUCGUGCAUgguGUGGUGCUG-GU- -5'
16189 5' -55.9 NC_004065.1 + 65574 0.7 0.815715
Target:  5'- cGCGAGUACcuGUACCGCGaCGCGGCgAa -3'
miRNA:   3'- cCGCUCGUG--CAUGGUGUgGUGCUGgU- -5'
16189 5' -55.9 NC_004065.1 + 138136 0.7 0.824019
Target:  5'- cGGUGAGCAUG-GCUACA--GCGGCCGg -3'
miRNA:   3'- -CCGCUCGUGCaUGGUGUggUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 45801 0.7 0.824019
Target:  5'- cGgGGGCugGcGCCACacGCCGCGugCGg -3'
miRNA:   3'- cCgCUCGugCaUGGUG--UGGUGCugGU- -5'
16189 5' -55.9 NC_004065.1 + 110385 0.7 0.83216
Target:  5'- cGCGcaGGC-CGUucgaaCACGCCACGGCCGa -3'
miRNA:   3'- cCGC--UCGuGCAug---GUGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 26967 0.7 0.835369
Target:  5'- uGGCGgugguGGUGCGcUGCCucaaacgucaaaacaACACCACGACCc -3'
miRNA:   3'- -CCGC-----UCGUGC-AUGG---------------UGUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 195221 0.7 0.839342
Target:  5'- aGCgGAGCACGaggggcuUGCCGagguagugcacCACCGCGGCCGc -3'
miRNA:   3'- cCG-CUCGUGC-------AUGGU-----------GUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 79084 0.7 0.840131
Target:  5'- uGCGuGCAagagauCGUGCCGCugaucuACUACGACCGa -3'
miRNA:   3'- cCGCuCGU------GCAUGGUG------UGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 137479 0.7 0.840131
Target:  5'- uGCGcGCGCGUGCgCGCGCC-CGcCCGc -3'
miRNA:   3'- cCGCuCGUGCAUG-GUGUGGuGCuGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.