Results 41 - 60 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16189 | 5' | -55.9 | NC_004065.1 | + | 75154 | 0.71 | 0.789899 |
Target: 5'- aGGCGAGCaggacgaagACGUGUCGCGUCAUGACCu -3' miRNA: 3'- -CCGCUCG---------UGCAUGGUGUGGUGCUGGu -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 143124 | 0.71 | 0.789899 |
Target: 5'- cGcCGAGgGCGagACCgGCGCCGCGACCu -3' miRNA: 3'- cC-GCUCgUGCa-UGG-UGUGGUGCUGGu -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 109868 | 0.71 | 0.797779 |
Target: 5'- -cCGGGCG-GUGCCACcggcgucGCCGCGGCCGc -3' miRNA: 3'- ccGCUCGUgCAUGGUG-------UGGUGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 77774 | 0.71 | 0.798647 |
Target: 5'- uGCGAGCugaugGCGUGCuCGUACCGCGACa- -3' miRNA: 3'- cCGCUCG-----UGCAUG-GUGUGGUGCUGgu -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 90346 | 0.71 | 0.798647 |
Target: 5'- uGGCGuAGCACGUGugACAgCAgCGGCCGc -3' miRNA: 3'- -CCGC-UCGUGCAUggUGUgGU-GCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 102028 | 0.71 | 0.798647 |
Target: 5'- cGGCGGGCcaccuCGgugACC-CGCgGCGGCCGg -3' miRNA: 3'- -CCGCUCGu----GCa--UGGuGUGgUGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 207956 | 0.71 | 0.798647 |
Target: 5'- cGCGGGUugG-GCC--GCCGCGACCGa -3' miRNA: 3'- cCGCUCGugCaUGGugUGGUGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 207796 | 0.71 | 0.807256 |
Target: 5'- gGGCGccGGCACGaugACgGuCAUCGCGACCGu -3' miRNA: 3'- -CCGC--UCGUGCa--UGgU-GUGGUGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 163173 | 0.71 | 0.807256 |
Target: 5'- cGGCGAuuucaccgGCACGUACCucucCGCCuCGuACCGg -3' miRNA: 3'- -CCGCU--------CGUGCAUGGu---GUGGuGC-UGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 124467 | 0.71 | 0.807256 |
Target: 5'- cGGCGcGC-CGUGCCGCugCGCcggguccagGGCCGc -3' miRNA: 3'- -CCGCuCGuGCAUGGUGugGUG---------CUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 114589 | 0.7 | 0.813193 |
Target: 5'- cGGCGgagugcccuacgagGGCugGUAUCGCccucGCUACGACCc -3' miRNA: 3'- -CCGC--------------UCGugCAUGGUG----UGGUGCUGGu -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 67155 | 0.7 | 0.815715 |
Target: 5'- aGUGGGCACGUAaucUACCGCGACgCAg -3' miRNA: 3'- cCGCUCGUGCAUgguGUGGUGCUG-GU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 65574 | 0.7 | 0.815715 |
Target: 5'- cGCGAGUACcuGUACCGCGaCGCGGCgAa -3' miRNA: 3'- cCGCUCGUG--CAUGGUGUgGUGCUGgU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 138136 | 0.7 | 0.824019 |
Target: 5'- cGGUGAGCAUG-GCUACA--GCGGCCGg -3' miRNA: 3'- -CCGCUCGUGCaUGGUGUggUGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 45801 | 0.7 | 0.824019 |
Target: 5'- cGgGGGCugGcGCCACacGCCGCGugCGg -3' miRNA: 3'- cCgCUCGugCaUGGUG--UGGUGCugGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 110385 | 0.7 | 0.83216 |
Target: 5'- cGCGcaGGC-CGUucgaaCACGCCACGGCCGa -3' miRNA: 3'- cCGC--UCGuGCAug---GUGUGGUGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 26967 | 0.7 | 0.835369 |
Target: 5'- uGGCGgugguGGUGCGcUGCCucaaacgucaaaacaACACCACGACCc -3' miRNA: 3'- -CCGC-----UCGUGC-AUGG---------------UGUGGUGCUGGu -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 195221 | 0.7 | 0.839342 |
Target: 5'- aGCgGAGCACGaggggcuUGCCGagguagugcacCACCGCGGCCGc -3' miRNA: 3'- cCG-CUCGUGC-------AUGGU-----------GUGGUGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 79084 | 0.7 | 0.840131 |
Target: 5'- uGCGuGCAagagauCGUGCCGCugaucuACUACGACCGa -3' miRNA: 3'- cCGCuCGU------GCAUGGUG------UGGUGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 137479 | 0.7 | 0.840131 |
Target: 5'- uGCGcGCGCGUGCgCGCGCC-CGcCCGc -3' miRNA: 3'- cCGCuCGUGCAUG-GUGUGGuGCuGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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