miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 35118 0.7 0.847154
Target:  5'- uGGCuGuGCACGUagcaacgaucuccGCCgguguACACCGCGAUCAg -3'
miRNA:   3'- -CCG-CuCGUGCA-------------UGG-----UGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 209134 0.7 0.847925
Target:  5'- aGCGAGCGgauuCCccaGCGCCGCGGCCGu -3'
miRNA:   3'- cCGCUCGUgcauGG---UGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 192414 0.7 0.847925
Target:  5'- uGUGAGC-CGUACaGCAUgACGACCu -3'
miRNA:   3'- cCGCUCGuGCAUGgUGUGgUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 143728 0.7 0.847925
Target:  5'- cGGCGAGCGagacgacuuCGUGCagaaACAgcUCACGACCc -3'
miRNA:   3'- -CCGCUCGU---------GCAUGg---UGU--GGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 78599 0.7 0.847925
Target:  5'- cGGCGGGCAgaaaagagguCG-ACCAC-CC-CGACCGa -3'
miRNA:   3'- -CCGCUCGU----------GCaUGGUGuGGuGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 42713 0.7 0.847925
Target:  5'- cGGCGAGCGCuccuccGCCccagugaucgcaGCGCgGCGGCCGc -3'
miRNA:   3'- -CCGCUCGUGca----UGG------------UGUGgUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 202492 0.7 0.847925
Target:  5'- uGCG-GCGCGUGCgagugguggaggCACGCCGCGAUgAa -3'
miRNA:   3'- cCGCuCGUGCAUG------------GUGUGGUGCUGgU- -5'
16189 5' -55.9 NC_004065.1 + 45828 0.7 0.847925
Target:  5'- gGGUGGGCAUGUAUCGgACC--GGCCGc -3'
miRNA:   3'- -CCGCUCGUGCAUGGUgUGGugCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 147027 0.7 0.847925
Target:  5'- uGCGAGaucuuCGUGCgACGCCccgucgacuGCGACCAg -3'
miRNA:   3'- cCGCUCgu---GCAUGgUGUGG---------UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 36366 0.69 0.854784
Target:  5'- aGGCGAGUGCGUcGCUAUcgucgcucucgcuGCCGCcGCCAc -3'
miRNA:   3'- -CCGCUCGUGCA-UGGUG-------------UGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 91714 0.69 0.855536
Target:  5'- aGGCcucGCACGcgaucaggGCCGCGuCCACGGCCu -3'
miRNA:   3'- -CCGcu-CGUGCa-------UGGUGU-GGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 87639 0.69 0.855536
Target:  5'- cGCGAGCGCGaACUgcgcgccuucgACACCccCGACCGc -3'
miRNA:   3'- cCGCUCGUGCaUGG-----------UGUGGu-GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 38180 0.69 0.855536
Target:  5'- cGGCGAuaGuCGCG-GCCGuCACCACGACg- -3'
miRNA:   3'- -CCGCU--C-GUGCaUGGU-GUGGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 56140 0.69 0.855536
Target:  5'- aGGCG-GCgGCGgcCCACACaCACGGCg- -3'
miRNA:   3'- -CCGCuCG-UGCauGGUGUG-GUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 167954 0.69 0.862958
Target:  5'- cGGCGAGCuuCGU-CgGCuuguCCACGAUCGa -3'
miRNA:   3'- -CCGCUCGu-GCAuGgUGu---GGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 128464 0.69 0.862958
Target:  5'- cGCGGGCGCG-AUCAggcUACCACuGCCAg -3'
miRNA:   3'- cCGCUCGUGCaUGGU---GUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 133143 0.69 0.862958
Target:  5'- cGUGAGCucc-ACCACGguCCACGGCCAg -3'
miRNA:   3'- cCGCUCGugcaUGGUGU--GGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 140925 0.69 0.862958
Target:  5'- gGGCauGAGCACGcGCCugACGCCGCaGaACCAc -3'
miRNA:   3'- -CCG--CUCGUGCaUGG--UGUGGUG-C-UGGU- -5'
16189 5' -55.9 NC_004065.1 + 176797 0.69 0.870186
Target:  5'- aGGCGAgGCGCGU---GCGCCA-GACCGa -3'
miRNA:   3'- -CCGCU-CGUGCAuggUGUGGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 63477 0.69 0.870186
Target:  5'- uGGaGAGCGUGUGCUACGagCACGACCu -3'
miRNA:   3'- -CCgCUCGUGCAUGGUGUg-GUGCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.