miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 229573 0.66 0.96582
Target:  5'- aGGCGAGCGCGcgucuggauuccuaUGCUAa--CACGugCGc -3'
miRNA:   3'- -CCGCUCGUGC--------------AUGGUgugGUGCugGU- -5'
16189 5' -55.9 NC_004065.1 + 29041 0.66 0.963599
Target:  5'- cGGCGu-CGCG-ACCcguCACCACGcACCGa -3'
miRNA:   3'- -CCGCucGUGCaUGGu--GUGGUGC-UGGU- -5'
16189 5' -55.9 NC_004065.1 + 133368 0.66 0.963599
Target:  5'- gGGCGAGCcCGccgacGCCGagaaagaGCuCGCGACCGc -3'
miRNA:   3'- -CCGCUCGuGCa----UGGUg------UG-GUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 99406 0.66 0.963599
Target:  5'- cGGCGGGCGCGUugCugGagaUCuuGACa- -3'
miRNA:   3'- -CCGCUCGUGCAugGugU---GGugCUGgu -5'
16189 5' -55.9 NC_004065.1 + 205052 0.66 0.963599
Target:  5'- aGGcCGAGgGaCGc-CCAC-CCACGACCGa -3'
miRNA:   3'- -CC-GCUCgU-GCauGGUGuGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 103858 0.66 0.963599
Target:  5'- cGGCGAuCGCGcACCACGCgauCAUGGCgGa -3'
miRNA:   3'- -CCGCUcGUGCaUGGUGUG---GUGCUGgU- -5'
16189 5' -55.9 NC_004065.1 + 229266 0.66 0.963599
Target:  5'- aGGuCGAGCGCGaacCCGCGaCGCGGCa- -3'
miRNA:   3'- -CC-GCUCGUGCau-GGUGUgGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 97069 0.66 0.963599
Target:  5'- uGGCGAuggugauugcuGCugGUGCUGCugcugucuCCGCGACg- -3'
miRNA:   3'- -CCGCU-----------CGugCAUGGUGu-------GGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 92472 0.66 0.963599
Target:  5'- cGCG-GCgAUGUGCCGgGCCAgaggcUGACCGg -3'
miRNA:   3'- cCGCuCG-UGCAUGGUgUGGU-----GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 198316 0.66 0.963599
Target:  5'- cGGgGucGCACaUGCCGCGgaACGGCCAg -3'
miRNA:   3'- -CCgCu-CGUGcAUGGUGUggUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 145130 0.66 0.963599
Target:  5'- aGGC-AGCACGcgaugGCCAUcguCCACGuCCGc -3'
miRNA:   3'- -CCGcUCGUGCa----UGGUGu--GGUGCuGGU- -5'
16189 5' -55.9 NC_004065.1 + 176958 0.66 0.963599
Target:  5'- cGGCGAagacGCcguuCGUAUCuuCGuCCGCGGCCAg -3'
miRNA:   3'- -CCGCU----CGu---GCAUGGu-GU-GGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 63183 0.66 0.963274
Target:  5'- uGGCGAGCugcuacaacgggaGCGaguuccaACCGCugCACGAUg- -3'
miRNA:   3'- -CCGCUCG-------------UGCa------UGGUGugGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 94953 0.66 0.960253
Target:  5'- uGGCGcuGCGgGgcCCGCuCCGCGGCUg -3'
miRNA:   3'- -CCGCu-CGUgCauGGUGuGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 203628 0.66 0.960253
Target:  5'- uGGCGAGCGCaacucucucGccaacacacCCACACCACGcauaucagcGCCAg -3'
miRNA:   3'- -CCGCUCGUG---------Cau-------GGUGUGGUGC---------UGGU- -5'
16189 5' -55.9 NC_004065.1 + 109041 0.66 0.960253
Target:  5'- uGCGAGCGCuu-CCGCGgCAgGAUCGa -3'
miRNA:   3'- cCGCUCGUGcauGGUGUgGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 100591 0.66 0.960253
Target:  5'- cGCG-GCACGUACCGguCCGaGGCgCAc -3'
miRNA:   3'- cCGCuCGUGCAUGGUguGGUgCUG-GU- -5'
16189 5' -55.9 NC_004065.1 + 139494 0.66 0.960253
Target:  5'- gGGCGGGaCGagaaGUAcuccCCGCACCACcuGGCCu -3'
miRNA:   3'- -CCGCUC-GUg---CAU----GGUGUGGUG--CUGGu -5'
16189 5' -55.9 NC_004065.1 + 100353 0.66 0.960253
Target:  5'- uGGCGuauAGCGCGgaagaugaGCCGguCgACGGCCAg -3'
miRNA:   3'- -CCGC---UCGUGCa-------UGGUguGgUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 124528 0.66 0.958147
Target:  5'- -uCGGGCACGUGCgC-CACCAgguggaacagcuccuCGGCCGc -3'
miRNA:   3'- ccGCUCGUGCAUG-GuGUGGU---------------GCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.