miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 75854 0.66 0.956702
Target:  5'- cGGCGAGCcaGCaacaGCCGcCGCCGCcGCCGc -3'
miRNA:   3'- -CCGCUCG--UGca--UGGU-GUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 24272 0.66 0.956702
Target:  5'- cGGUGAGCucACGgcUCGCGgccCCGCGACa- -3'
miRNA:   3'- -CCGCUCG--UGCauGGUGU---GGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 106997 0.66 0.955595
Target:  5'- aGGCGcAGCgccgucggACGUcacgcucgccggagACCgACAcCCACGACCAu -3'
miRNA:   3'- -CCGC-UCG--------UGCA--------------UGG-UGU-GGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 105034 0.66 0.952939
Target:  5'- cGUGAGCGCGcugcacgacCCGCGCCucUGGCCGc -3'
miRNA:   3'- cCGCUCGUGCau-------GGUGUGGu-GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 128407 0.66 0.952939
Target:  5'- gGGcCGAGCggcaGCGgcgGCgGCGCCGCcACCGa -3'
miRNA:   3'- -CC-GCUCG----UGCa--UGgUGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 183430 0.66 0.952939
Target:  5'- uGGUgGAGCACG-AUCAUGCgGcCGACCGa -3'
miRNA:   3'- -CCG-CUCGUGCaUGGUGUGgU-GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 190830 0.66 0.952939
Target:  5'- cGCGAcaccguGCGCGagaaauaACCACGCCGCcGCCGu -3'
miRNA:   3'- cCGCU------CGUGCa------UGGUGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 201023 0.66 0.952939
Target:  5'- cGCGuGCGCGcggcGCCuCGCCACcGCCGc -3'
miRNA:   3'- cCGCuCGUGCa---UGGuGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 60893 0.66 0.952939
Target:  5'- cGCGAGCGucuCGggaACUGCugGCCGCGGCCc -3'
miRNA:   3'- cCGCUCGU---GCa--UGGUG--UGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 228929 0.66 0.952939
Target:  5'- gGGaCGAGaCGCGUACCA-ACU-CGACCu -3'
miRNA:   3'- -CC-GCUC-GUGCAUGGUgUGGuGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 139673 0.66 0.952939
Target:  5'- cGGCG-GCcgcugcugucacACGUGCUACGCCACcuCCu -3'
miRNA:   3'- -CCGCuCG------------UGCAUGGUGUGGUGcuGGu -5'
16189 5' -55.9 NC_004065.1 + 31078 0.67 0.948963
Target:  5'- cGCG-GCugGUgGCCACggGCgGCGAUCAg -3'
miRNA:   3'- cCGCuCGugCA-UGGUG--UGgUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 179597 0.67 0.948963
Target:  5'- cGCGuGUGCG-ACCGCGCCuCGAgCGa -3'
miRNA:   3'- cCGCuCGUGCaUGGUGUGGuGCUgGU- -5'
16189 5' -55.9 NC_004065.1 + 159068 0.67 0.948963
Target:  5'- cGCGAuCugG-ACCGacCGCCGCGACCc -3'
miRNA:   3'- cCGCUcGugCaUGGU--GUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 33198 0.67 0.948963
Target:  5'- cGCccGCACcUGCCGCaggugACCACGACCc -3'
miRNA:   3'- cCGcuCGUGcAUGGUG-----UGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 82863 0.67 0.948963
Target:  5'- uGGCGAagaGCAC--GCCGC-UCAUGGCCAc -3'
miRNA:   3'- -CCGCU---CGUGcaUGGUGuGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 87533 0.67 0.948963
Target:  5'- cGCGcAGCGCGUGCCAgACgGgGuuaGCCGc -3'
miRNA:   3'- cCGC-UCGUGCAUGGUgUGgUgC---UGGU- -5'
16189 5' -55.9 NC_004065.1 + 44546 0.67 0.94477
Target:  5'- uGGCG-GCGC-UGCCucccgacccGCACCACcACCAc -3'
miRNA:   3'- -CCGCuCGUGcAUGG---------UGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 126830 0.67 0.94477
Target:  5'- aGCGAcaaaGCGCGUGCUccuGgACC-CGACCGu -3'
miRNA:   3'- cCGCU----CGUGCAUGG---UgUGGuGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 151359 0.67 0.94477
Target:  5'- gGGCGccgcGGCGCcgGCCGCugCgcugGCGGCCGa -3'
miRNA:   3'- -CCGC----UCGUGcaUGGUGugG----UGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.