Results 61 - 80 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16189 | 5' | -55.9 | NC_004065.1 | + | 126830 | 0.67 | 0.94477 |
Target: 5'- aGCGAcaaaGCGCGUGCUccuGgACC-CGACCGu -3' miRNA: 3'- cCGCU----CGUGCAUGG---UgUGGuGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 72918 | 0.67 | 0.94477 |
Target: 5'- cGCGAGuCGCGccuCCGCGgC-CGGCCAa -3' miRNA: 3'- cCGCUC-GUGCau-GGUGUgGuGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 59779 | 0.67 | 0.94477 |
Target: 5'- cGGCGGcCACG-GCCACgauACCggggcaACGACCAa -3' miRNA: 3'- -CCGCUcGUGCaUGGUG---UGG------UGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 151359 | 0.67 | 0.94477 |
Target: 5'- gGGCGccgcGGCGCcgGCCGCugCgcugGCGGCCGa -3' miRNA: 3'- -CCGC----UCGUGcaUGGUGugG----UGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 133437 | 0.67 | 0.940358 |
Target: 5'- cGGgGAGUgcaGCGUcGCCACGCguCGCGGCUc -3' miRNA: 3'- -CCgCUCG---UGCA-UGGUGUG--GUGCUGGu -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 110843 | 0.67 | 0.940358 |
Target: 5'- uGCgGGGCGCGgGCCGC-CCGCGucgaACCGu -3' miRNA: 3'- cCG-CUCGUGCaUGGUGuGGUGC----UGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 110434 | 0.67 | 0.940358 |
Target: 5'- cGGCGuccuGCACGU-CCAgGCCA--GCCGu -3' miRNA: 3'- -CCGCu---CGUGCAuGGUgUGGUgcUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 89100 | 0.67 | 0.940358 |
Target: 5'- cGGCGucaGGCGCGUGCuCAUGcCCugGAUg- -3' miRNA: 3'- -CCGC---UCGUGCAUG-GUGU-GGugCUGgu -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 11517 | 0.67 | 0.940358 |
Target: 5'- -cCGAGCACauaUAUCgauagACACCACGACCc -3' miRNA: 3'- ccGCUCGUGc--AUGG-----UGUGGUGCUGGu -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 41047 | 0.67 | 0.935724 |
Target: 5'- cGCaGAGCuCGgGCCGCGCgGCGACgAa -3' miRNA: 3'- cCG-CUCGuGCaUGGUGUGgUGCUGgU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 189898 | 0.67 | 0.935724 |
Target: 5'- -aCGAGCGCGgagaucGCCAcCACCaauauaGCGGCCGc -3' miRNA: 3'- ccGCUCGUGCa-----UGGU-GUGG------UGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 21982 | 0.67 | 0.935724 |
Target: 5'- cGGUGAGgGCc-GCCACGgCCACG-CCGa -3' miRNA: 3'- -CCGCUCgUGcaUGGUGU-GGUGCuGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 38764 | 0.67 | 0.935724 |
Target: 5'- cGCGAGUAcCGUuuCCACACCG-GGCUg -3' miRNA: 3'- cCGCUCGU-GCAu-GGUGUGGUgCUGGu -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 199860 | 0.67 | 0.935724 |
Target: 5'- cGCaGGCACucgucgGUGCCGCACagcacgaGCGGCCGg -3' miRNA: 3'- cCGcUCGUG------CAUGGUGUGg------UGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 162086 | 0.67 | 0.935724 |
Target: 5'- aGCGAacggguGCuCGUACCACGuCCGCGuguCCGa -3' miRNA: 3'- cCGCU------CGuGCAUGGUGU-GGUGCu--GGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 63988 | 0.67 | 0.935724 |
Target: 5'- aGGCGucacAGCugGU-CCGCAUCAcCGACa- -3' miRNA: 3'- -CCGC----UCGugCAuGGUGUGGU-GCUGgu -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 29133 | 0.67 | 0.935724 |
Target: 5'- aGCG-GCA-GUACCGCuaCACGACCGa -3' miRNA: 3'- cCGCuCGUgCAUGGUGugGUGCUGGU- -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 133077 | 0.67 | 0.934771 |
Target: 5'- cGGCGAGCugGaccucgggaucgGCCGCGCgACGGu-- -3' miRNA: 3'- -CCGCUCGugCa-----------UGGUGUGgUGCUggu -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 163387 | 0.67 | 0.930868 |
Target: 5'- aGCGucAGCGCGUccgccacgcagcGCCGCAgcCCGCGGCUc -3' miRNA: 3'- cCGC--UCGUGCA------------UGGUGU--GGUGCUGGu -5' |
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16189 | 5' | -55.9 | NC_004065.1 | + | 154339 | 0.67 | 0.930868 |
Target: 5'- aGGUGGGgGCGcgGCCAagaaucagcCCGCGGCCGc -3' miRNA: 3'- -CCGCUCgUGCa-UGGUgu-------GGUGCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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