miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 121837 0.67 0.930868
Target:  5'- gGGCccuGCgACGU-CCGCACCcCGACCc -3'
miRNA:   3'- -CCGcu-CG-UGCAuGGUGUGGuGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 163387 0.67 0.930868
Target:  5'- aGCGucAGCGCGUccgccacgcagcGCCGCAgcCCGCGGCUc -3'
miRNA:   3'- cCGC--UCGUGCA------------UGGUGU--GGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 147340 0.67 0.930868
Target:  5'- uGGCcacGCACaUGCUGCGCCucuCGGCCAg -3'
miRNA:   3'- -CCGcu-CGUGcAUGGUGUGGu--GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 125468 0.67 0.930868
Target:  5'- cGGCGuGCACagcgGCCGCACC-UGcCCGu -3'
miRNA:   3'- -CCGCuCGUGca--UGGUGUGGuGCuGGU- -5'
16189 5' -55.9 NC_004065.1 + 149652 0.67 0.930868
Target:  5'- aGGCccuGCACGcGCCGCAgCGCguuGACCGu -3'
miRNA:   3'- -CCGcu-CGUGCaUGGUGUgGUG---CUGGU- -5'
16189 5' -55.9 NC_004065.1 + 196547 0.67 0.925788
Target:  5'- uGCcGGCGCGUAggCGC-CCACGGCCGc -3'
miRNA:   3'- cCGcUCGUGCAUg-GUGuGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 117015 0.67 0.925788
Target:  5'- aGGCGAuGCgcgcucACGUGCCgaccgagacgcuGCACCGCG-CCu -3'
miRNA:   3'- -CCGCU-CG------UGCAUGG------------UGUGGUGCuGGu -5'
16189 5' -55.9 NC_004065.1 + 55962 0.68 0.920485
Target:  5'- aGGUGcAGCACGgggACgACACCGCcAUCGu -3'
miRNA:   3'- -CCGC-UCGUGCa--UGgUGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 28473 0.68 0.920485
Target:  5'- cGGCGAGUugugGCGUcugGCCgacaGCGCCGCGGagcuCCGu -3'
miRNA:   3'- -CCGCUCG----UGCA---UGG----UGUGGUGCU----GGU- -5'
16189 5' -55.9 NC_004065.1 + 138046 0.68 0.920485
Target:  5'- gGGCGGuucagauucguGCACGuUGCCGCgcaaACCAUGuCCAg -3'
miRNA:   3'- -CCGCU-----------CGUGC-AUGGUG----UGGUGCuGGU- -5'
16189 5' -55.9 NC_004065.1 + 123021 0.68 0.920485
Target:  5'- cGGCGAGCgugACGUccgACgGCGCUGCG-CCu -3'
miRNA:   3'- -CCGCUCG---UGCA---UGgUGUGGUGCuGGu -5'
16189 5' -55.9 NC_004065.1 + 65377 0.68 0.920485
Target:  5'- gGGCGA-CGCGcGCCGCgACC-CGACUg -3'
miRNA:   3'- -CCGCUcGUGCaUGGUG-UGGuGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 77208 0.68 0.920485
Target:  5'- cGGCGccccGCACGgcgaugGCCACGCUGaucgUGGCCAc -3'
miRNA:   3'- -CCGCu---CGUGCa-----UGGUGUGGU----GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 185949 0.68 0.920485
Target:  5'- cGGCGAuCACaacUACCACugCaugGCGACCu -3'
miRNA:   3'- -CCGCUcGUGc--AUGGUGugG---UGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 197914 0.68 0.920485
Target:  5'- cGGCGGGCACGUAguCCuCAUCGuCGGUCGg -3'
miRNA:   3'- -CCGCUCGUGCAU--GGuGUGGU-GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 99933 0.68 0.91885
Target:  5'- gGGCGGGCGCcgaacggcaucgccGUagucgACCAcCGCCGCGGCg- -3'
miRNA:   3'- -CCGCUCGUG--------------CA-----UGGU-GUGGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 85170 0.68 0.917196
Target:  5'- aGCGAGCACGgcaCGCAggugaaccagucgacCCGCGACa- -3'
miRNA:   3'- cCGCUCGUGCaugGUGU---------------GGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 160270 0.68 0.914959
Target:  5'- cGCGugcauguccGGCGCGUGCUuCGCCAgGAUCGu -3'
miRNA:   3'- cCGC---------UCGUGCAUGGuGUGGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 37903 0.68 0.914959
Target:  5'- cGGaCGAGCugACGUacACCugACCACGcuGCUg -3'
miRNA:   3'- -CC-GCUCG--UGCA--UGGugUGGUGC--UGGu -5'
16189 5' -55.9 NC_004065.1 + 78839 0.68 0.911536
Target:  5'- cGGCGcaCACGUGCCugGaCCucucccccuacgggaACGACCAg -3'
miRNA:   3'- -CCGCucGUGCAUGGugU-GG---------------UGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.