miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 646 0.72 0.744324
Target:  5'- gGGUGAGUGCGUccgGCCGCGCguaGCGAgCAc -3'
miRNA:   3'- -CCGCUCGUGCA---UGGUGUGg--UGCUgGU- -5'
16189 5' -55.9 NC_004065.1 + 7419 0.67 0.94477
Target:  5'- uGCGAcgGUACGUAUCagauACACCugGACaCGa -3'
miRNA:   3'- cCGCU--CGUGCAUGG----UGUGGugCUG-GU- -5'
16189 5' -55.9 NC_004065.1 + 11517 0.67 0.940358
Target:  5'- -cCGAGCACauaUAUCgauagACACCACGACCc -3'
miRNA:   3'- ccGCUCGUGc--AUGG-----UGUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 16452 0.76 0.501526
Target:  5'- aGCGAGCcCgGUACCACguucGCUACGACCGa -3'
miRNA:   3'- cCGCUCGuG-CAUGGUG----UGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 21982 0.67 0.935724
Target:  5'- cGGUGAGgGCc-GCCACGgCCACG-CCGa -3'
miRNA:   3'- -CCGCUCgUGcaUGGUGU-GGUGCuGGU- -5'
16189 5' -55.9 NC_004065.1 + 24272 0.66 0.956702
Target:  5'- cGGUGAGCucACGgcUCGCGgccCCGCGACa- -3'
miRNA:   3'- -CCGCUCG--UGCauGGUGU---GGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 24481 0.67 0.94477
Target:  5'- -aUGGGCGCGUagAUgGCACCGCcGCCGg -3'
miRNA:   3'- ccGCUCGUGCA--UGgUGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 26967 0.7 0.835369
Target:  5'- uGGCGgugguGGUGCGcUGCCucaaacgucaaaacaACACCACGACCc -3'
miRNA:   3'- -CCGC-----UCGUGC-AUGG---------------UGUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 27953 0.66 0.966743
Target:  5'- uGGUGcAGCACacgucccuGUACCuCGCCAUGGgCAa -3'
miRNA:   3'- -CCGC-UCGUG--------CAUGGuGUGGUGCUgGU- -5'
16189 5' -55.9 NC_004065.1 + 28473 0.68 0.920485
Target:  5'- cGGCGAGUugugGCGUcugGCCgacaGCGCCGCGGagcuCCGu -3'
miRNA:   3'- -CCGCUCG----UGCA---UGG----UGUGGUGCU----GGU- -5'
16189 5' -55.9 NC_004065.1 + 28808 0.68 0.909211
Target:  5'- cGCGGguccucugcacGCACGUcGCCGCGCCGCccgaGCCGg -3'
miRNA:   3'- cCGCU-----------CGUGCA-UGGUGUGGUGc---UGGU- -5'
16189 5' -55.9 NC_004065.1 + 29041 0.66 0.963599
Target:  5'- cGGCGu-CGCG-ACCcguCACCACGcACCGa -3'
miRNA:   3'- -CCGCucGUGCaUGGu--GUGGUGC-UGGU- -5'
16189 5' -55.9 NC_004065.1 + 29133 0.67 0.935724
Target:  5'- aGCG-GCA-GUACCGCuaCACGACCGa -3'
miRNA:   3'- cCGCuCGUgCAUGGUGugGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 29797 0.71 0.781017
Target:  5'- cGGCGGGC-CGuUACaCGCugCuCGGCCAg -3'
miRNA:   3'- -CCGCUCGuGC-AUG-GUGugGuGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 31078 0.67 0.948963
Target:  5'- cGCG-GCugGUgGCCACggGCgGCGAUCAg -3'
miRNA:   3'- cCGCuCGugCA-UGGUG--UGgUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 32006 0.66 0.96969
Target:  5'- cGGCGAcCGCG-ACCGCcuCCGaGGCCAu -3'
miRNA:   3'- -CCGCUcGUGCaUGGUGu-GGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 33198 0.67 0.948963
Target:  5'- cGCccGCACcUGCCGCaggugACCACGACCc -3'
miRNA:   3'- cCGcuCGUGcAUGGUG-----UGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 35118 0.7 0.847154
Target:  5'- uGGCuGuGCACGUagcaacgaucuccGCCgguguACACCGCGAUCAg -3'
miRNA:   3'- -CCG-CuCGUGCA-------------UGG-----UGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 36366 0.69 0.854784
Target:  5'- aGGCGAGUGCGUcGCUAUcgucgcucucgcuGCCGCcGCCAc -3'
miRNA:   3'- -CCGCUCGUGCA-UGGUG-------------UGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 37246 0.69 0.890652
Target:  5'- aGGCGaAGCAgCGaaaACCggACACgACGACCAc -3'
miRNA:   3'- -CCGC-UCGU-GCa--UGG--UGUGgUGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.