miRNA display CGI


Results 21 - 40 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 37903 0.68 0.914959
Target:  5'- cGGaCGAGCugACGUacACCugACCACGcuGCUg -3'
miRNA:   3'- -CC-GCUCG--UGCA--UGGugUGGUGC--UGGu -5'
16189 5' -55.9 NC_004065.1 + 38180 0.69 0.855536
Target:  5'- cGGCGAuaGuCGCG-GCCGuCACCACGACg- -3'
miRNA:   3'- -CCGCU--C-GUGCaUGGU-GUGGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 38764 0.67 0.935724
Target:  5'- cGCGAGUAcCGUuuCCACACCG-GGCUg -3'
miRNA:   3'- cCGCUCGU-GCAu-GGUGUGGUgCUGGu -5'
16189 5' -55.9 NC_004065.1 + 41047 0.67 0.935724
Target:  5'- cGCaGAGCuCGgGCCGCGCgGCGACgAa -3'
miRNA:   3'- cCG-CUCGuGCaUGGUGUGgUGCUGgU- -5'
16189 5' -55.9 NC_004065.1 + 42713 0.7 0.847925
Target:  5'- cGGCGAGCGCuccuccGCCccagugaucgcaGCGCgGCGGCCGc -3'
miRNA:   3'- -CCGCUCGUGca----UGG------------UGUGgUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 43335 0.69 0.890652
Target:  5'- cGGCGGGgACGccccaCGCGCCGCGuCCc -3'
miRNA:   3'- -CCGCUCgUGCaug--GUGUGGUGCuGGu -5'
16189 5' -55.9 NC_004065.1 + 44546 0.67 0.94477
Target:  5'- uGGCG-GCGC-UGCCucccgacccGCACCACcACCAc -3'
miRNA:   3'- -CCGCuCGUGcAUGG---------UGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 45801 0.7 0.824019
Target:  5'- cGgGGGCugGcGCCACacGCCGCGugCGg -3'
miRNA:   3'- cCgCUCGugCaUGGUG--UGGUGCugGU- -5'
16189 5' -55.9 NC_004065.1 + 45828 0.7 0.847925
Target:  5'- gGGUGGGCAUGUAUCGgACC--GGCCGc -3'
miRNA:   3'- -CCGCUCGUGCAUGGUgUGGugCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 46659 0.66 0.96969
Target:  5'- cGGCGAGCGCGcucugcucgaUACUcuACACCGCcuaCAc -3'
miRNA:   3'- -CCGCUCGUGC----------AUGG--UGUGGUGcugGU- -5'
16189 5' -55.9 NC_004065.1 + 50332 0.72 0.744324
Target:  5'- uGGUG-GCACGcgugGCCAcCGCCGCGAUCc -3'
miRNA:   3'- -CCGCuCGUGCa---UGGU-GUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 50892 0.68 0.897055
Target:  5'- gGGCGAG-ACgGUACUcCACCGCcACCAg -3'
miRNA:   3'- -CCGCUCgUG-CAUGGuGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 55962 0.68 0.920485
Target:  5'- aGGUGcAGCACGgggACgACACCGCcAUCGu -3'
miRNA:   3'- -CCGC-UCGUGCa--UGgUGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 56140 0.69 0.855536
Target:  5'- aGGCG-GCgGCGgcCCACACaCACGGCg- -3'
miRNA:   3'- -CCGCuCG-UGCauGGUGUG-GUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 59779 0.67 0.94477
Target:  5'- cGGCGGcCACG-GCCACgauACCggggcaACGACCAa -3'
miRNA:   3'- -CCGCUcGUGCaUGGUG---UGG------UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 60893 0.66 0.952939
Target:  5'- cGCGAGCGucuCGggaACUGCugGCCGCGGCCc -3'
miRNA:   3'- cCGCUCGU---GCa--UGGUG--UGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 62401 0.69 0.877214
Target:  5'- -aCGAGCAuccCGUACCugACCAC-ACUAa -3'
miRNA:   3'- ccGCUCGU---GCAUGGugUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 63183 0.66 0.963274
Target:  5'- uGGCGAGCugcuacaacgggaGCGaguuccaACCGCugCACGAUg- -3'
miRNA:   3'- -CCGCUCG-------------UGCa------UGGUGugGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 63477 0.69 0.870186
Target:  5'- uGGaGAGCGUGUGCUACGagCACGACCu -3'
miRNA:   3'- -CCgCUCGUGCAUGGUGUg-GUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 63988 0.67 0.935724
Target:  5'- aGGCGucacAGCugGU-CCGCAUCAcCGACa- -3'
miRNA:   3'- -CCGC----UCGugCAuGGUGUGGU-GCUGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.