miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 65377 0.68 0.920485
Target:  5'- gGGCGA-CGCGcGCCGCgACC-CGACUg -3'
miRNA:   3'- -CCGCUcGUGCaUGGUG-UGGuGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 65574 0.7 0.815715
Target:  5'- cGCGAGUACcuGUACCGCGaCGCGGCgAa -3'
miRNA:   3'- cCGCUCGUG--CAUGGUGUgGUGCUGgU- -5'
16189 5' -55.9 NC_004065.1 + 66129 0.66 0.966743
Target:  5'- aGGCGcuGGCGCGcuggGCCGCggaccggcGCCAgcUGGCCGa -3'
miRNA:   3'- -CCGC--UCGUGCa---UGGUG--------UGGU--GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 66582 0.73 0.676899
Target:  5'- uGGCGAGCGCcUGCCGCACgAUgGACgCGg -3'
miRNA:   3'- -CCGCUCGUGcAUGGUGUGgUG-CUG-GU- -5'
16189 5' -55.9 NC_004065.1 + 66846 0.71 0.781017
Target:  5'- aGGCGgagaGGUACGUGCCGggaaauCGCCgaACGACCu -3'
miRNA:   3'- -CCGC----UCGUGCAUGGU------GUGG--UGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 67155 0.7 0.815715
Target:  5'- aGUGGGCACGUAaucUACCGCGACgCAg -3'
miRNA:   3'- cCGCUCGUGCAUgguGUGGUGCUG-GU- -5'
16189 5' -55.9 NC_004065.1 + 67849 0.66 0.966743
Target:  5'- --aGGGCACGgcgaagACCuGCGCCGCaGCCGg -3'
miRNA:   3'- ccgCUCGUGCa-----UGG-UGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 69752 0.72 0.744324
Target:  5'- uGGCGaAGCACGcGCCggacauGCACgCGCGACUg -3'
miRNA:   3'- -CCGC-UCGUGCaUGG------UGUG-GUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 70762 0.68 0.909211
Target:  5'- cGGCGGcCACcacccUGCCcuACAUCACGGCCAa -3'
miRNA:   3'- -CCGCUcGUGc----AUGG--UGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 72918 0.67 0.94477
Target:  5'- cGCGAGuCGCGccuCCGCGgC-CGGCCAa -3'
miRNA:   3'- cCGCUC-GUGCau-GGUGUgGuGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 75154 0.71 0.789899
Target:  5'- aGGCGAGCaggacgaagACGUGUCGCGUCAUGACCu -3'
miRNA:   3'- -CCGCUCG---------UGCAUGGUGUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 75854 0.66 0.956702
Target:  5'- cGGCGAGCcaGCaacaGCCGcCGCCGCcGCCGc -3'
miRNA:   3'- -CCGCUCG--UGca--UGGU-GUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 76738 0.73 0.696456
Target:  5'- cGGCGGGgACGggcGCgGCGCCGgCGGCCu -3'
miRNA:   3'- -CCGCUCgUGCa--UGgUGUGGU-GCUGGu -5'
16189 5' -55.9 NC_004065.1 + 77208 0.68 0.920485
Target:  5'- cGGCGccccGCACGgcgaugGCCACGCUGaucgUGGCCAc -3'
miRNA:   3'- -CCGCu---CGUGCa-----UGGUGUGGU----GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 77774 0.71 0.798647
Target:  5'- uGCGAGCugaugGCGUGCuCGUACCGCGACa- -3'
miRNA:   3'- cCGCUCG-----UGCAUG-GUGUGGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 78599 0.7 0.847925
Target:  5'- cGGCGGGCAgaaaagagguCG-ACCAC-CC-CGACCGa -3'
miRNA:   3'- -CCGCUCGU----------GCaUGGUGuGGuGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 78839 0.68 0.911536
Target:  5'- cGGCGcaCACGUGCCugGaCCucucccccuacgggaACGACCAg -3'
miRNA:   3'- -CCGCucGUGCAUGGugU-GG---------------UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 79084 0.7 0.840131
Target:  5'- uGCGuGCAagagauCGUGCCGCugaucuACUACGACCGa -3'
miRNA:   3'- cCGCuCGU------GCAUGGUG------UGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 79296 0.66 0.966743
Target:  5'- gGGCGAGC-UGU-CgACgGCCugGGCCu -3'
miRNA:   3'- -CCGCUCGuGCAuGgUG-UGGugCUGGu -5'
16189 5' -55.9 NC_004065.1 + 79965 0.68 0.903242
Target:  5'- gGGUGAGgACGUACUcgACACgGucgcCGACCGc -3'
miRNA:   3'- -CCGCUCgUGCAUGG--UGUGgU----GCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.