miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 82863 0.67 0.948963
Target:  5'- uGGCGAagaGCAC--GCCGC-UCAUGGCCAc -3'
miRNA:   3'- -CCGCU---CGUGcaUGGUGuGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 85170 0.68 0.917196
Target:  5'- aGCGAGCACGgcaCGCAggugaaccagucgacCCGCGACa- -3'
miRNA:   3'- cCGCUCGUGCaugGUGU---------------GGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 87533 0.67 0.948963
Target:  5'- cGCGcAGCGCGUGCCAgACgGgGuuaGCCGc -3'
miRNA:   3'- cCGC-UCGUGCAUGGUgUGgUgC---UGGU- -5'
16189 5' -55.9 NC_004065.1 + 87639 0.69 0.855536
Target:  5'- cGCGAGCGCGaACUgcgcgccuucgACACCccCGACCGc -3'
miRNA:   3'- cCGCUCGUGCaUGG-----------UGUGGu-GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 89100 0.67 0.940358
Target:  5'- cGGCGucaGGCGCGUGCuCAUGcCCugGAUg- -3'
miRNA:   3'- -CCGC---UCGUGCAUG-GUGU-GGugCUGgu -5'
16189 5' -55.9 NC_004065.1 + 89809 0.74 0.597903
Target:  5'- cGGCG-GC-CGU-CUGCGCCGCGACCu -3'
miRNA:   3'- -CCGCuCGuGCAuGGUGUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 90346 0.71 0.798647
Target:  5'- uGGCGuAGCACGUGugACAgCAgCGGCCGc -3'
miRNA:   3'- -CCGC-UCGUGCAUggUGUgGU-GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 91714 0.69 0.855536
Target:  5'- aGGCcucGCACGcgaucaggGCCGCGuCCACGGCCu -3'
miRNA:   3'- -CCGcu-CGUGCa-------UGGUGU-GGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 92472 0.66 0.963599
Target:  5'- cGCG-GCgAUGUGCCGgGCCAgaggcUGACCGg -3'
miRNA:   3'- cCGCuCG-UGCAUGGUgUGGU-----GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 94144 0.69 0.890652
Target:  5'- cGCGugccuGCGCGUACCAgAUCAcauCGGCCc -3'
miRNA:   3'- cCGCu----CGUGCAUGGUgUGGU---GCUGGu -5'
16189 5' -55.9 NC_004065.1 + 94953 0.66 0.960253
Target:  5'- uGGCGcuGCGgGgcCCGCuCCGCGGCUg -3'
miRNA:   3'- -CCGCu-CGUgCauGGUGuGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 96754 0.76 0.501526
Target:  5'- gGGCGAGCagggcgacgGCGgagGCgGCAUCGCGGCCGu -3'
miRNA:   3'- -CCGCUCG---------UGCa--UGgUGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 97069 0.66 0.963599
Target:  5'- uGGCGAuggugauugcuGCugGUGCUGCugcugucuCCGCGACg- -3'
miRNA:   3'- -CCGCU-----------CGugCAUGGUGu-------GGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 97947 0.72 0.715812
Target:  5'- cGGCGuGGCAgCGguggggACC-UACCGCGACCAg -3'
miRNA:   3'- -CCGC-UCGU-GCa-----UGGuGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 98929 0.71 0.781017
Target:  5'- gGGCGAGCuGCGUACCGuugGCCagaGCGACg- -3'
miRNA:   3'- -CCGCUCG-UGCAUGGUg--UGG---UGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 99406 0.66 0.963599
Target:  5'- cGGCGGGCGCGUugCugGagaUCuuGACa- -3'
miRNA:   3'- -CCGCUCGUGCAugGugU---GGugCUGgu -5'
16189 5' -55.9 NC_004065.1 + 99933 0.68 0.91885
Target:  5'- gGGCGGGCGCcgaacggcaucgccGUagucgACCAcCGCCGCGGCg- -3'
miRNA:   3'- -CCGCUCGUG--------------CA-----UGGU-GUGGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 100311 0.69 0.883364
Target:  5'- cGCGAugucuucGCGCa-GCCACACCGCGuCCGu -3'
miRNA:   3'- cCGCU-------CGUGcaUGGUGUGGUGCuGGU- -5'
16189 5' -55.9 NC_004065.1 + 100353 0.66 0.960253
Target:  5'- uGGCGuauAGCGCGgaagaugaGCCGguCgACGGCCAg -3'
miRNA:   3'- -CCGC---UCGUGCa-------UGGUguGgUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 100591 0.66 0.960253
Target:  5'- cGCG-GCACGUACCGguCCGaGGCgCAc -3'
miRNA:   3'- cCGCuCGUGCAUGGUguGGUgCUG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.