miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 229573 0.66 0.96582
Target:  5'- aGGCGAGCGCGcgucuggauuccuaUGCUAa--CACGugCGc -3'
miRNA:   3'- -CCGCUCGUGC--------------AUGGUgugGUGCugGU- -5'
16189 5' -55.9 NC_004065.1 + 229363 0.75 0.588063
Target:  5'- aGCGAGCGgGUGCuCGCuACgCGCGGCCGg -3'
miRNA:   3'- cCGCUCGUgCAUG-GUG-UG-GUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 229266 0.66 0.963599
Target:  5'- aGGuCGAGCGCGaacCCGCGaCGCGGCa- -3'
miRNA:   3'- -CC-GCUCGUGCau-GGUGUgGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 228929 0.66 0.952939
Target:  5'- gGGaCGAGaCGCGUACCA-ACU-CGACCu -3'
miRNA:   3'- -CC-GCUC-GUGCAUGGUgUGGuGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 209134 0.7 0.847925
Target:  5'- aGCGAGCGgauuCCccaGCGCCGCGGCCGu -3'
miRNA:   3'- cCGCUCGUgcauGG---UGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 208911 0.68 0.905656
Target:  5'- gGGCGcAGCAgaaaGUGCCACACgucucuccgucgugGCGGCCGa -3'
miRNA:   3'- -CCGC-UCGUg---CAUGGUGUGg-------------UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 208344 0.8 0.341397
Target:  5'- cGCGGuCGCGUAUCugACCGCGACCGu -3'
miRNA:   3'- cCGCUcGUGCAUGGugUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 208211 0.69 0.89
Target:  5'- gGGCGAggauucaagagguGCACGUcgACCACGCCggAUGAacCCAa -3'
miRNA:   3'- -CCGCU-------------CGUGCA--UGGUGUGG--UGCU--GGU- -5'
16189 5' -55.9 NC_004065.1 + 207956 0.71 0.798647
Target:  5'- cGCGGGUugG-GCC--GCCGCGACCGa -3'
miRNA:   3'- cCGCUCGugCaUGGugUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 207796 0.71 0.807256
Target:  5'- gGGCGccGGCACGaugACgGuCAUCGCGACCGu -3'
miRNA:   3'- -CCGC--UCGUGCa--UGgU-GUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 207441 0.68 0.897055
Target:  5'- -cCGGGCACGaAUUACACCACGAg-- -3'
miRNA:   3'- ccGCUCGUGCaUGGUGUGGUGCUggu -5'
16189 5' -55.9 NC_004065.1 + 205765 0.69 0.890652
Target:  5'- cGUGAGCucaccgaGUGCCGCACCaacaACGACa- -3'
miRNA:   3'- cCGCUCGug-----CAUGGUGUGG----UGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 205052 0.66 0.963599
Target:  5'- aGGcCGAGgGaCGc-CCAC-CCACGACCGa -3'
miRNA:   3'- -CC-GCUCgU-GCauGGUGuGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 204563 0.68 0.909211
Target:  5'- cGGCGcGUACGU-CCACACCucgcaGAUCu -3'
miRNA:   3'- -CCGCuCGUGCAuGGUGUGGug---CUGGu -5'
16189 5' -55.9 NC_004065.1 + 204111 0.66 0.966743
Target:  5'- cGGCGGgaaccugcGCAUGgccugGCC-CGCCGgGGCCGu -3'
miRNA:   3'- -CCGCU--------CGUGCa----UGGuGUGGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 203628 0.66 0.960253
Target:  5'- uGGCGAGCGCaacucucucGccaacacacCCACACCACGcauaucagcGCCAg -3'
miRNA:   3'- -CCGCUCGUG---------Cau-------GGUGUGGUGC---------UGGU- -5'
16189 5' -55.9 NC_004065.1 + 203064 0.78 0.429602
Target:  5'- uGGCGAGCucCGgaGCC-CGCCGCGGCCGc -3'
miRNA:   3'- -CCGCUCGu-GCa-UGGuGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 202492 0.7 0.847925
Target:  5'- uGCG-GCGCGUGCgagugguggaggCACGCCGCGAUgAa -3'
miRNA:   3'- cCGCuCGUGCAUG------------GUGUGGUGCUGgU- -5'
16189 5' -55.9 NC_004065.1 + 202316 0.72 0.706163
Target:  5'- cGCGAGCACGgGCCagACGCC-CGAUCc -3'
miRNA:   3'- cCGCUCGUGCaUGG--UGUGGuGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 202067 0.69 0.877214
Target:  5'- uGGCGAgGUACagggacguGUGCUGCACCaucgGCGACCu -3'
miRNA:   3'- -CCGCU-CGUG--------CAUGGUGUGG----UGCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.