miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 201023 0.66 0.952939
Target:  5'- cGCGuGCGCGcggcGCCuCGCCACcGCCGc -3'
miRNA:   3'- cCGCuCGUGCa---UGGuGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 199860 0.67 0.935724
Target:  5'- cGCaGGCACucgucgGUGCCGCACagcacgaGCGGCCGg -3'
miRNA:   3'- cCGcUCGUG------CAUGGUGUGg------UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 199554 0.66 0.966743
Target:  5'- -cCGGGCGCGccCCAUcguGCCGCGGuCCAg -3'
miRNA:   3'- ccGCUCGUGCauGGUG---UGGUGCU-GGU- -5'
16189 5' -55.9 NC_004065.1 + 199209 0.67 0.930868
Target:  5'- cGCGAGgACG---CGCACCGCGACg- -3'
miRNA:   3'- cCGCUCgUGCaugGUGUGGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 198562 0.66 0.96969
Target:  5'- cGCGcGGCACGgACCGCugCAUGuCUu -3'
miRNA:   3'- cCGC-UCGUGCaUGGUGugGUGCuGGu -5'
16189 5' -55.9 NC_004065.1 + 198532 0.68 0.909211
Target:  5'- aGGCGAuGUACcucaGCCGCACCAgGuCCGc -3'
miRNA:   3'- -CCGCU-CGUGca--UGGUGUGGUgCuGGU- -5'
16189 5' -55.9 NC_004065.1 + 198316 0.66 0.963599
Target:  5'- cGGgGucGCACaUGCCGCGgaACGGCCAg -3'
miRNA:   3'- -CCgCu-CGUGcAUGGUGUggUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 198132 0.68 0.909211
Target:  5'- uGCGAGCugGUcaucGCCGCcGCCAUGGgUg -3'
miRNA:   3'- cCGCUCGugCA----UGGUG-UGGUGCUgGu -5'
16189 5' -55.9 NC_004065.1 + 197914 0.68 0.920485
Target:  5'- cGGCGGGCACGUAguCCuCAUCGuCGGUCGg -3'
miRNA:   3'- -CCGCUCGUGCAU--GGuGUGGU-GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 197576 0.72 0.725394
Target:  5'- uGGUGGGCAUGcgGCUGCGCUacuACGACCc -3'
miRNA:   3'- -CCGCUCGUGCa-UGGUGUGG---UGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 196547 0.67 0.925788
Target:  5'- uGCcGGCGCGUAggCGC-CCACGGCCGc -3'
miRNA:   3'- cCGcUCGUGCAUg-GUGuGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 195408 0.71 0.781017
Target:  5'- cGGCGAGCcguacACGUACgCuccCGCCGCGucGCCGu -3'
miRNA:   3'- -CCGCUCG-----UGCAUG-Gu--GUGGUGC--UGGU- -5'
16189 5' -55.9 NC_004065.1 + 195221 0.7 0.839342
Target:  5'- aGCgGAGCACGaggggcuUGCCGagguagugcacCACCGCGGCCGc -3'
miRNA:   3'- cCG-CUCGUGC-------AUGGU-----------GUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 192414 0.7 0.847925
Target:  5'- uGUGAGC-CGUACaGCAUgACGACCu -3'
miRNA:   3'- cCGCUCGuGCAUGgUGUGgUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 190830 0.66 0.952939
Target:  5'- cGCGAcaccguGCGCGagaaauaACCACGCCGCcGCCGu -3'
miRNA:   3'- cCGCU------CGUGCa------UGGUGUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 189898 0.67 0.935724
Target:  5'- -aCGAGCGCGgagaucGCCAcCACCaauauaGCGGCCGc -3'
miRNA:   3'- ccGCUCGUGCa-----UGGU-GUGG------UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 188637 1.11 0.003665
Target:  5'- cGGCGAGCACGUACCACACCACGACCAg -3'
miRNA:   3'- -CCGCUCGUGCAUGGUGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 187944 0.68 0.909211
Target:  5'- cGGCGAcGCGCacaucagcgagGUcaGCCACACCAgcGCCAg -3'
miRNA:   3'- -CCGCU-CGUG-----------CA--UGGUGUGGUgcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 185949 0.68 0.920485
Target:  5'- cGGCGAuCACaacUACCACugCaugGCGACCu -3'
miRNA:   3'- -CCGCUcGUGc--AUGGUGugG---UGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 183430 0.66 0.952939
Target:  5'- uGGUgGAGCACG-AUCAUGCgGcCGACCGa -3'
miRNA:   3'- -CCG-CUCGUGCaUGGUGUGgU-GCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.