miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 182149 0.68 0.897055
Target:  5'- cGGUacccGGCAcCGaAgCACACCGCGGCCAu -3'
miRNA:   3'- -CCGc---UCGU-GCaUgGUGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 179694 0.66 0.968826
Target:  5'- cGGCGguGGCcacGCGUGCCACcacucucuguuguuGCCucGCGAUCGc -3'
miRNA:   3'- -CCGC--UCG---UGCAUGGUG--------------UGG--UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 179597 0.67 0.948963
Target:  5'- cGCGuGUGCG-ACCGCGCCuCGAgCGa -3'
miRNA:   3'- cCGCuCGUGCaUGGUGUGGuGCUgGU- -5'
16189 5' -55.9 NC_004065.1 + 178224 0.66 0.96969
Target:  5'- uGCGGGCGCGUGUCuCAuCCACuGCCu -3'
miRNA:   3'- cCGCUCGUGCAUGGuGU-GGUGcUGGu -5'
16189 5' -55.9 NC_004065.1 + 176958 0.66 0.963599
Target:  5'- cGGCGAagacGCcguuCGUAUCuuCGuCCGCGGCCAg -3'
miRNA:   3'- -CCGCU----CGu---GCAUGGu-GU-GGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 176797 0.69 0.870186
Target:  5'- aGGCGAgGCGCGU---GCGCCA-GACCGa -3'
miRNA:   3'- -CCGCU-CGUGCAuggUGUGGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 175475 0.72 0.753656
Target:  5'- uGCGAGCACGccCCAUcguCCACgGACCGu -3'
miRNA:   3'- cCGCUCGUGCauGGUGu--GGUG-CUGGU- -5'
16189 5' -55.9 NC_004065.1 + 174591 0.68 0.896424
Target:  5'- cGGCGAcccccgcuaggaaGCAC--GCCAcCACCACGACgAg -3'
miRNA:   3'- -CCGCU-------------CGUGcaUGGU-GUGGUGCUGgU- -5'
16189 5' -55.9 NC_004065.1 + 171009 0.73 0.657204
Target:  5'- cGCGAGCACGaACCGCcgACCcUGGCCu -3'
miRNA:   3'- cCGCUCGUGCaUGGUG--UGGuGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 170080 0.79 0.385429
Target:  5'- uGGCGGGCACcacuccgggcuucugGCCGCGCCGCGACa- -3'
miRNA:   3'- -CCGCUCGUGca-------------UGGUGUGGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 169957 0.72 0.725394
Target:  5'- -aCGAGCGCGgcCCGCGuCgCAUGACCAa -3'
miRNA:   3'- ccGCUCGUGCauGGUGU-G-GUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 167954 0.69 0.862958
Target:  5'- cGGCGAGCuuCGU-CgGCuuguCCACGAUCGa -3'
miRNA:   3'- -CCGCUCGu-GCAuGgUGu---GGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 167924 0.66 0.966743
Target:  5'- cGCGAGCguaACG-ACCGCcgcuGCCGCuGCCGu -3'
miRNA:   3'- cCGCUCG---UGCaUGGUG----UGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 163879 0.71 0.762888
Target:  5'- cGGCcAGCugGcGCCGguCCGCGGCCc -3'
miRNA:   3'- -CCGcUCGugCaUGGUguGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 163645 0.69 0.877214
Target:  5'- aGCGAGCGCa-GCCGCuCgACGAUCAg -3'
miRNA:   3'- cCGCUCGUGcaUGGUGuGgUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 163387 0.67 0.930868
Target:  5'- aGCGucAGCGCGUccgccacgcagcGCCGCAgcCCGCGGCUc -3'
miRNA:   3'- cCGC--UCGUGCA------------UGGUGU--GGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 163379 0.66 0.966743
Target:  5'- cGcCGGGCGCccACCGCGCCGaaGCCGa -3'
miRNA:   3'- cC-GCUCGUGcaUGGUGUGGUgcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 163173 0.71 0.807256
Target:  5'- cGGCGAuuucaccgGCACGUACCucucCGCCuCGuACCGg -3'
miRNA:   3'- -CCGCU--------CGUGCAUGGu---GUGGuGC-UGGU- -5'
16189 5' -55.9 NC_004065.1 + 162603 0.73 0.686698
Target:  5'- uGCGGGUcgaacACGUAggucgccccCCGCGCCACGAUCAc -3'
miRNA:   3'- cCGCUCG-----UGCAU---------GGUGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 162465 0.74 0.647325
Target:  5'- cGGC-AGCGCGUGaagUACACCAgGACCGc -3'
miRNA:   3'- -CCGcUCGUGCAUg--GUGUGGUgCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.