miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 124467 0.71 0.807256
Target:  5'- cGGCGcGC-CGUGCCGCugCGCcggguccagGGCCGc -3'
miRNA:   3'- -CCGCuCGuGCAUGGUGugGUG---------CUGGU- -5'
16189 5' -55.9 NC_004065.1 + 175475 0.72 0.753656
Target:  5'- uGCGAGCACGccCCAUcguCCACgGACCGu -3'
miRNA:   3'- cCGCUCGUGCauGGUGu--GGUG-CUGGU- -5'
16189 5' -55.9 NC_004065.1 + 66846 0.71 0.781017
Target:  5'- aGGCGgagaGGUACGUGCCGggaaauCGCCgaACGACCu -3'
miRNA:   3'- -CCGC----UCGUGCAUGGU------GUGG--UGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 195408 0.71 0.781017
Target:  5'- cGGCGAGCcguacACGUACgCuccCGCCGCGucGCCGu -3'
miRNA:   3'- -CCGCUCG-----UGCAUG-Gu--GUGGUGC--UGGU- -5'
16189 5' -55.9 NC_004065.1 + 75154 0.71 0.789899
Target:  5'- aGGCGAGCaggacgaagACGUGUCGCGUCAUGACCu -3'
miRNA:   3'- -CCGCUCG---------UGCAUGGUGUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 143124 0.71 0.789899
Target:  5'- cGcCGAGgGCGagACCgGCGCCGCGACCu -3'
miRNA:   3'- cC-GCUCgUGCa-UGG-UGUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 109868 0.71 0.797779
Target:  5'- -cCGGGCG-GUGCCACcggcgucGCCGCGGCCGc -3'
miRNA:   3'- ccGCUCGUgCAUGGUG-------UGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 77774 0.71 0.798647
Target:  5'- uGCGAGCugaugGCGUGCuCGUACCGCGACa- -3'
miRNA:   3'- cCGCUCG-----UGCAUG-GUGUGGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 90346 0.71 0.798647
Target:  5'- uGGCGuAGCACGUGugACAgCAgCGGCCGc -3'
miRNA:   3'- -CCGC-UCGUGCAUggUGUgGU-GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 69752 0.72 0.744324
Target:  5'- uGGCGaAGCACGcGCCggacauGCACgCGCGACUg -3'
miRNA:   3'- -CCGC-UCGUGCaUGG------UGUG-GUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 50332 0.72 0.744324
Target:  5'- uGGUG-GCACGcgugGCCAcCGCCGCGAUCc -3'
miRNA:   3'- -CCGCuCGUGCa---UGGU-GUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 76738 0.73 0.696456
Target:  5'- cGGCGGGgACGggcGCgGCGCCGgCGGCCu -3'
miRNA:   3'- -CCGCUCgUGCa--UGgUGUGGU-GCUGGu -5'
16189 5' -55.9 NC_004065.1 + 208344 0.8 0.341397
Target:  5'- cGCGGuCGCGUAUCugACCGCGACCGu -3'
miRNA:   3'- cCGCUcGUGCAUGGugUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 96754 0.76 0.501526
Target:  5'- gGGCGAGCagggcgacgGCGgagGCgGCAUCGCGGCCGu -3'
miRNA:   3'- -CCGCUCG---------UGCa--UGgUGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 229363 0.75 0.588063
Target:  5'- aGCGAGCGgGUGCuCGCuACgCGCGGCCGg -3'
miRNA:   3'- cCGCUCGUgCAUG-GUG-UG-GUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 131545 0.74 0.607767
Target:  5'- cGGCGAGCACauGUACacgGCCAUGAUCAg -3'
miRNA:   3'- -CCGCUCGUG--CAUGgugUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 110691 0.74 0.647325
Target:  5'- uGGUGAGUgugACGUgaGCCGcCGCCGCGACUc -3'
miRNA:   3'- -CCGCUCG---UGCA--UGGU-GUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 118822 0.73 0.661151
Target:  5'- uGGCGAGCGUGUcgacuguugguuuccACCGuCAuCCACGACCGc -3'
miRNA:   3'- -CCGCUCGUGCA---------------UGGU-GU-GGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 66582 0.73 0.676899
Target:  5'- uGGCGAGCGCcUGCCGCACgAUgGACgCGg -3'
miRNA:   3'- -CCGCUCGUGcAUGGUGUGgUG-CUG-GU- -5'
16189 5' -55.9 NC_004065.1 + 135389 0.73 0.686698
Target:  5'- cGGUGAcGCGCcgGCCGCGCC-CGACCc -3'
miRNA:   3'- -CCGCU-CGUGcaUGGUGUGGuGCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.