miRNA display CGI


Results 61 - 80 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 90346 0.71 0.798647
Target:  5'- uGGCGuAGCACGUGugACAgCAgCGGCCGc -3'
miRNA:   3'- -CCGC-UCGUGCAUggUGUgGU-GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 124467 0.71 0.807256
Target:  5'- cGGCGcGC-CGUGCCGCugCGCcggguccagGGCCGc -3'
miRNA:   3'- -CCGCuCGuGCAUGGUGugGUG---------CUGGU- -5'
16189 5' -55.9 NC_004065.1 + 42713 0.7 0.847925
Target:  5'- cGGCGAGCGCuccuccGCCccagugaucgcaGCGCgGCGGCCGc -3'
miRNA:   3'- -CCGCUCGUGca----UGG------------UGUGgUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 78599 0.7 0.847925
Target:  5'- cGGCGGGCAgaaaagagguCG-ACCAC-CC-CGACCGa -3'
miRNA:   3'- -CCGCUCGU----------GCaUGGUGuGGuGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 143728 0.7 0.847925
Target:  5'- cGGCGAGCGagacgacuuCGUGCagaaACAgcUCACGACCc -3'
miRNA:   3'- -CCGCUCGU---------GCAUGg---UGU--GGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 36366 0.69 0.854784
Target:  5'- aGGCGAGUGCGUcGCUAUcgucgcucucgcuGCCGCcGCCAc -3'
miRNA:   3'- -CCGCUCGUGCA-UGGUG-------------UGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 128464 0.69 0.862958
Target:  5'- cGCGGGCGCG-AUCAggcUACCACuGCCAg -3'
miRNA:   3'- cCGCUCGUGCaUGGU---GUGGUGcUGGU- -5'
16189 5' -55.9 NC_004065.1 + 167954 0.69 0.862958
Target:  5'- cGGCGAGCuuCGU-CgGCuuguCCACGAUCGa -3'
miRNA:   3'- -CCGCUCGu-GCAuGgUGu---GGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 176797 0.69 0.870186
Target:  5'- aGGCGAgGCGCGU---GCGCCA-GACCGa -3'
miRNA:   3'- -CCGCU-CGUGCAuggUGUGGUgCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 202067 0.69 0.877214
Target:  5'- uGGCGAgGUACagggacguGUGCUGCACCaucgGCGACCu -3'
miRNA:   3'- -CCGCU-CGUG--------CAUGGUGUGG----UGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 147027 0.7 0.847925
Target:  5'- uGCGAGaucuuCGUGCgACGCCccgucgacuGCGACCAg -3'
miRNA:   3'- cCGCUCgu---GCAUGgUGUGG---------UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 45828 0.7 0.847925
Target:  5'- gGGUGGGCAUGUAUCGgACC--GGCCGc -3'
miRNA:   3'- -CCGCUCGUGCAUGGUgUGGugCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 114589 0.7 0.813193
Target:  5'- cGGCGgagugcccuacgagGGCugGUAUCGCccucGCUACGACCc -3'
miRNA:   3'- -CCGC--------------UCGugCAUGGUG----UGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 65574 0.7 0.815715
Target:  5'- cGCGAGUACcuGUACCGCGaCGCGGCgAa -3'
miRNA:   3'- cCGCUCGUG--CAUGGUGUgGUGCUGgU- -5'
16189 5' -55.9 NC_004065.1 + 45801 0.7 0.824019
Target:  5'- cGgGGGCugGcGCCACacGCCGCGugCGg -3'
miRNA:   3'- cCgCUCGugCaUGGUG--UGGUGCugGU- -5'
16189 5' -55.9 NC_004065.1 + 138136 0.7 0.824019
Target:  5'- cGGUGAGCAUG-GCUACA--GCGGCCGg -3'
miRNA:   3'- -CCGCUCGUGCaUGGUGUggUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 110385 0.7 0.83216
Target:  5'- cGCGcaGGC-CGUucgaaCACGCCACGGCCGa -3'
miRNA:   3'- cCGC--UCGuGCAug---GUGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 195221 0.7 0.839342
Target:  5'- aGCgGAGCACGaggggcuUGCCGagguagugcacCACCGCGGCCGc -3'
miRNA:   3'- cCG-CUCGUGC-------AUGGU-----------GUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 79084 0.7 0.840131
Target:  5'- uGCGuGCAagagauCGUGCCGCugaucuACUACGACCGa -3'
miRNA:   3'- cCGCuCGU------GCAUGGUG------UGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 35118 0.7 0.847154
Target:  5'- uGGCuGuGCACGUagcaacgaucuccGCCgguguACACCGCGAUCAg -3'
miRNA:   3'- -CCG-CuCGUGCA-------------UGG-----UGUGGUGCUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.