miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 170080 0.79 0.385429
Target:  5'- uGGCGGGCACcacuccgggcuucugGCCGCGCCGCGACa- -3'
miRNA:   3'- -CCGCUCGUGca-------------UGGUGUGGUGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 106349 0.72 0.734901
Target:  5'- cGGCGcugcuGCACGggcAgCGCGCCACGugCGa -3'
miRNA:   3'- -CCGCu----CGUGCa--UgGUGUGGUGCugGU- -5'
16189 5' -55.9 NC_004065.1 + 130427 0.72 0.751797
Target:  5'- cGGCGgaauucgugcugcAGCAgcUGUGCCcccagaaccugacGCACCACGGCCGu -3'
miRNA:   3'- -CCGC-------------UCGU--GCAUGG-------------UGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 117105 0.66 0.96969
Target:  5'- cGCGAGC--GUGCCGCGcCCugGugUc -3'
miRNA:   3'- cCGCUCGugCAUGGUGU-GGugCugGu -5'
16189 5' -55.9 NC_004065.1 + 135208 0.74 0.637434
Target:  5'- gGGCGGGCAUGUaACCggaugcaugACACagcaGCGACCGu -3'
miRNA:   3'- -CCGCUCGUGCA-UGG---------UGUGg---UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 129753 0.74 0.647325
Target:  5'- gGGCGAGCAgcUGUACCGCACgcguCACGAg-- -3'
miRNA:   3'- -CCGCUCGU--GCAUGGUGUG----GUGCUggu -5'
16189 5' -55.9 NC_004065.1 + 120247 0.73 0.657204
Target:  5'- cGGCGuAGCGCcUGCC-CugCugGACCGg -3'
miRNA:   3'- -CCGC-UCGUGcAUGGuGugGugCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 171009 0.73 0.657204
Target:  5'- cGCGAGCACGaACCGCcgACCcUGGCCu -3'
miRNA:   3'- cCGCUCGUGCaUGGUG--UGGuGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 132304 0.73 0.696456
Target:  5'- cGGCGAGCuguCGUGCCu--CCugGACa- -3'
miRNA:   3'- -CCGCUCGu--GCAUGGuguGGugCUGgu -5'
16189 5' -55.9 NC_004065.1 + 169957 0.72 0.725394
Target:  5'- -aCGAGCGCGgcCCGCGuCgCAUGACCAa -3'
miRNA:   3'- ccGCUCGUGCauGGUGU-G-GUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 97947 0.72 0.715812
Target:  5'- cGGCGuGGCAgCGguggggACC-UACCGCGACCAg -3'
miRNA:   3'- -CCGC-UCGU-GCa-----UGGuGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 162603 0.73 0.686698
Target:  5'- uGCGGGUcgaacACGUAggucgccccCCGCGCCACGAUCAc -3'
miRNA:   3'- cCGCUCG-----UGCAU---------GGUGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 203064 0.78 0.429602
Target:  5'- uGGCGAGCucCGgaGCC-CGCCGCGGCCGc -3'
miRNA:   3'- -CCGCUCGu-GCa-UGGuGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 122208 0.72 0.715812
Target:  5'- cGGCGccuacaGGCugGUGgcCCGCucgcCCACGGCCAa -3'
miRNA:   3'- -CCGC------UCGugCAU--GGUGu---GGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 16452 0.76 0.501526
Target:  5'- aGCGAGCcCgGUACCACguucGCUACGACCGa -3'
miRNA:   3'- cCGCUCGuG-CAUGGUG----UGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 147400 0.73 0.667064
Target:  5'- -aCGAGCuGCGcuuCCACACCuACGACCAg -3'
miRNA:   3'- ccGCUCG-UGCau-GGUGUGG-UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 197576 0.72 0.725394
Target:  5'- uGGUGGGCAUGcgGCUGCGCUacuACGACCc -3'
miRNA:   3'- -CCGCUCGUGCa-UGGUGUGG---UGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 646 0.72 0.744324
Target:  5'- gGGUGAGUGCGUccgGCCGCGCguaGCGAgCAc -3'
miRNA:   3'- -CCGCUCGUGCA---UGGUGUGg--UGCUgGU- -5'
16189 5' -55.9 NC_004065.1 + 89809 0.74 0.597903
Target:  5'- cGGCG-GC-CGU-CUGCGCCGCGACCu -3'
miRNA:   3'- -CCGCuCGuGCAuGGUGUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 162465 0.74 0.647325
Target:  5'- cGGC-AGCGCGUGaagUACACCAgGACCGc -3'
miRNA:   3'- -CCGcUCGUGCAUg--GUGUGGUgCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.