miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16189 5' -55.9 NC_004065.1 + 163879 0.71 0.762888
Target:  5'- cGGCcAGCugGcGCCGguCCGCGGCCc -3'
miRNA:   3'- -CCGcUCGugCaUGGUguGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 130427 0.72 0.751797
Target:  5'- cGGCGgaauucgugcugcAGCAgcUGUGCCcccagaaccugacGCACCACGGCCGu -3'
miRNA:   3'- -CCGC-------------UCGU--GCAUGG-------------UGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 162603 0.73 0.686698
Target:  5'- uGCGGGUcgaacACGUAggucgccccCCGCGCCACGAUCAc -3'
miRNA:   3'- cCGCUCG-----UGCAU---------GGUGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 89809 0.74 0.597903
Target:  5'- cGGCG-GC-CGU-CUGCGCCGCGACCu -3'
miRNA:   3'- -CCGCuCGuGCAuGGUGUGGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 192414 0.7 0.847925
Target:  5'- uGUGAGC-CGUACaGCAUgACGACCu -3'
miRNA:   3'- cCGCUCGuGCAUGgUGUGgUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 163173 0.71 0.807256
Target:  5'- cGGCGAuuucaccgGCACGUACCucucCGCCuCGuACCGg -3'
miRNA:   3'- -CCGCU--------CGUGCAUGGu---GUGGuGC-UGGU- -5'
16189 5' -55.9 NC_004065.1 + 106349 0.72 0.734901
Target:  5'- cGGCGcugcuGCACGggcAgCGCGCCACGugCGa -3'
miRNA:   3'- -CCGCu----CGUGCa--UgGUGUGGUGCugGU- -5'
16189 5' -55.9 NC_004065.1 + 16452 0.76 0.501526
Target:  5'- aGCGAGCcCgGUACCACguucGCUACGACCGa -3'
miRNA:   3'- cCGCUCGuG-CAUGGUG----UGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 207956 0.71 0.798647
Target:  5'- cGCGGGUugG-GCC--GCCGCGACCGa -3'
miRNA:   3'- cCGCUCGugCaUGGugUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 203064 0.78 0.429602
Target:  5'- uGGCGAGCucCGgaGCC-CGCCGCGGCCGc -3'
miRNA:   3'- -CCGCUCGu-GCa-UGGuGUGGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 646 0.72 0.744324
Target:  5'- gGGUGAGUGCGUccgGCCGCGCguaGCGAgCAc -3'
miRNA:   3'- -CCGCUCGUGCA---UGGUGUGg--UGCUgGU- -5'
16189 5' -55.9 NC_004065.1 + 98929 0.71 0.781017
Target:  5'- gGGCGAGCuGCGUACCGuugGCCagaGCGACg- -3'
miRNA:   3'- -CCGCUCG-UGCAUGGUg--UGG---UGCUGgu -5'
16189 5' -55.9 NC_004065.1 + 122208 0.72 0.715812
Target:  5'- cGGCGccuacaGGCugGUGgcCCGCucgcCCACGGCCAa -3'
miRNA:   3'- -CCGC------UCGugCAU--GGUGu---GGUGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 132304 0.73 0.696456
Target:  5'- cGGCGAGCuguCGUGCCu--CCugGACa- -3'
miRNA:   3'- -CCGCUCGu--GCAUGGuguGGugCUGgu -5'
16189 5' -55.9 NC_004065.1 + 120247 0.73 0.657204
Target:  5'- cGGCGuAGCGCcUGCC-CugCugGACCGg -3'
miRNA:   3'- -CCGC-UCGUGcAUGGuGugGugCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 135208 0.74 0.637434
Target:  5'- gGGCGGGCAUGUaACCggaugcaugACACagcaGCGACCGu -3'
miRNA:   3'- -CCGCUCGUGCA-UGG---------UGUGg---UGCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 87639 0.69 0.855536
Target:  5'- cGCGAGCGCGaACUgcgcgccuucgACACCccCGACCGc -3'
miRNA:   3'- cCGCUCGUGCaUGG-----------UGUGGu-GCUGGU- -5'
16189 5' -55.9 NC_004065.1 + 91714 0.69 0.855536
Target:  5'- aGGCcucGCACGcgaucaggGCCGCGuCCACGGCCu -3'
miRNA:   3'- -CCGcu-CGUGCa-------UGGUGU-GGUGCUGGu -5'
16189 5' -55.9 NC_004065.1 + 137479 0.7 0.840131
Target:  5'- uGCGcGCGCGUGCgCGCGCC-CGcCCGc -3'
miRNA:   3'- cCGCuCGUGCAUG-GUGUGGuGCuGGU- -5'
16189 5' -55.9 NC_004065.1 + 207796 0.71 0.807256
Target:  5'- gGGCGccGGCACGaugACgGuCAUCGCGACCGu -3'
miRNA:   3'- -CCGC--UCGUGCa--UGgU-GUGGUGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.