miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1619 3' -57.9 NC_001347.2 + 156843 0.66 0.917403
Target:  5'- uCgGCCUcugGAGGAGcacgugagucgucGGcGAGGGGUGUCGa -3'
miRNA:   3'- -GgCGGA---CUCCUU-------------CCcCUCCUCACAGU- -5'
1619 3' -57.9 NC_001347.2 + 135869 0.67 0.894381
Target:  5'- -aGCCcgggGAGGAGcGGGGuGGGGGUGg-- -3'
miRNA:   3'- ggCGGa---CUCCUU-CCCC-UCCUCACagu -5'
1619 3' -57.9 NC_001347.2 + 67763 0.67 0.887957
Target:  5'- uUCGCCUcccGGAGGGGAGGAGa---- -3'
miRNA:   3'- -GGCGGAcucCUUCCCCUCCUCacagu -5'
1619 3' -57.9 NC_001347.2 + 222941 0.67 0.887957
Target:  5'- cUCGUCUcgGGGGAccacaGGGGGAGGGGgGUa- -3'
miRNA:   3'- -GGCGGA--CUCCU-----UCCCCUCCUCaCAgu -5'
1619 3' -57.9 NC_001347.2 + 58130 0.67 0.881327
Target:  5'- gUGCUcagGAGGAGcGGGAGGAcacuGUGUCu -3'
miRNA:   3'- gGCGGa--CUCCUUcCCCUCCU----CACAGu -5'
1619 3' -57.9 NC_001347.2 + 39854 0.67 0.874494
Target:  5'- gCCGCgUGGuGGGuccucgagGGGcGGGGGGGUGUUu -3'
miRNA:   3'- -GGCGgACU-CCU--------UCC-CCUCCUCACAGu -5'
1619 3' -57.9 NC_001347.2 + 135230 0.67 0.867463
Target:  5'- gCgGCCgaugGGGGGAGGGGAGuGGGg---- -3'
miRNA:   3'- -GgCGGa---CUCCUUCCCCUC-CUCacagu -5'
1619 3' -57.9 NC_001347.2 + 185361 0.68 0.813137
Target:  5'- gCCGCCgUGGGGGccgcGGaGGGAGGAGa---- -3'
miRNA:   3'- -GGCGG-ACUCCU----UC-CCCUCCUCacagu -5'
1619 3' -57.9 NC_001347.2 + 144587 0.69 0.799601
Target:  5'- gCgGCCgggcucgugGAGGAggcaagaaagugguaGGGGGAGGGGUGa-- -3'
miRNA:   3'- -GgCGGa--------CUCCU---------------UCCCCUCCUCACagu -5'
1619 3' -57.9 NC_001347.2 + 164887 0.7 0.742229
Target:  5'- gCCGCCgcuaucgcUGAGGggGaGGAGGAGgcgGUg- -3'
miRNA:   3'- -GGCGG--------ACUCCuuCcCCUCCUCa--CAgu -5'
1619 3' -57.9 NC_001347.2 + 136711 0.72 0.626573
Target:  5'- cCCGguuCCgGAGGAgAGGGGGGGGGUGa-- -3'
miRNA:   3'- -GGC---GGaCUCCU-UCCCCUCCUCACagu -5'
1619 3' -57.9 NC_001347.2 + 142926 1.1 0.002744
Target:  5'- gCCGCCUGAGGAAGGGGAGGAGUGUCAg -3'
miRNA:   3'- -GGCGGACUCCUUCCCCUCCUCACAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.