miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1619 5' -61.4 NC_001347.2 + 86198 0.65 0.812988
Target:  5'- aGUCG--UCCGAGCCgCCGUgccggucgucgcacCGCUCGGc -3'
miRNA:   3'- -CAGUagAGGCUCGGgGGCA--------------GCGGGCU- -5'
1619 5' -61.4 NC_001347.2 + 20276 0.66 0.807251
Target:  5'- uUCAUgccCUCCGAGCCCggcagCGCCCa- -3'
miRNA:   3'- cAGUA---GAGGCUCGGGggca-GCGGGcu -5'
1619 5' -61.4 NC_001347.2 + 188982 0.66 0.807251
Target:  5'- ----gCUCCGAcGgCgCCGUUGCCCGGg -3'
miRNA:   3'- caguaGAGGCU-CgGgGGCAGCGGGCU- -5'
1619 5' -61.4 NC_001347.2 + 66756 0.66 0.790494
Target:  5'- -gUAUUguUCCGGGCCCgaccccgaCGUcCGCCCGAc -3'
miRNA:   3'- caGUAG--AGGCUCGGGg-------GCA-GCGGGCU- -5'
1619 5' -61.4 NC_001347.2 + 200202 0.66 0.773238
Target:  5'- cGUgGUgUgcgaCGGGCCCCCGggcUCGCCCa- -3'
miRNA:   3'- -CAgUAgAg---GCUCGGGGGC---AGCGGGcu -5'
1619 5' -61.4 NC_001347.2 + 28994 0.66 0.773238
Target:  5'- ----cCUCUGGGCCCCgGUCgcggguaguauGCCUGAa -3'
miRNA:   3'- caguaGAGGCUCGGGGgCAG-----------CGGGCU- -5'
1619 5' -61.4 NC_001347.2 + 132654 0.66 0.764442
Target:  5'- cGUCuUCUCCGGgacGUCUugCCGUCGUCCGu -3'
miRNA:   3'- -CAGuAGAGGCU---CGGG--GGCAGCGGGCu -5'
1619 5' -61.4 NC_001347.2 + 163619 0.67 0.755544
Target:  5'- uGUCAgcgCCGAGCCgCgGcUGCCCGGg -3'
miRNA:   3'- -CAGUagaGGCUCGGgGgCaGCGGGCU- -5'
1619 5' -61.4 NC_001347.2 + 111282 0.67 0.755544
Target:  5'- -cCGUCUCCGAGUuucUCCCGcagUCcCCCGGa -3'
miRNA:   3'- caGUAGAGGCUCG---GGGGC---AGcGGGCU- -5'
1619 5' -61.4 NC_001347.2 + 109582 0.67 0.737469
Target:  5'- ------gCCGAGUCCaCCGUCgcGCCCGAa -3'
miRNA:   3'- caguagaGGCUCGGG-GGCAG--CGGGCU- -5'
1619 5' -61.4 NC_001347.2 + 129309 0.67 0.728308
Target:  5'- uUCGUCgCCGAGUUCCCaGUUGUCCu- -3'
miRNA:   3'- cAGUAGaGGCUCGGGGG-CAGCGGGcu -5'
1619 5' -61.4 NC_001347.2 + 178856 0.67 0.719074
Target:  5'- uGUCGUC-CCG-GCCUCCGUCGagagCGAg -3'
miRNA:   3'- -CAGUAGaGGCuCGGGGGCAGCgg--GCU- -5'
1619 5' -61.4 NC_001347.2 + 44280 0.67 0.719074
Target:  5'- uGUCAUCUCgGcuCCUCCGUCuucuCCCGGc -3'
miRNA:   3'- -CAGUAGAGgCucGGGGGCAGc---GGGCU- -5'
1619 5' -61.4 NC_001347.2 + 82877 0.68 0.681565
Target:  5'- cGUCAUCggCGcGCCCCCaUCGCCUc- -3'
miRNA:   3'- -CAGUAGagGCuCGGGGGcAGCGGGcu -5'
1619 5' -61.4 NC_001347.2 + 222312 0.68 0.672081
Target:  5'- -cCAUCUCCGAcagGCCCUC-UC-CCCGAc -3'
miRNA:   3'- caGUAGAGGCU---CGGGGGcAGcGGGCU- -5'
1619 5' -61.4 NC_001347.2 + 199934 0.69 0.605278
Target:  5'- cUCAUCcgCCGGcguGUCCUCGUUGCUCGAg -3'
miRNA:   3'- cAGUAGa-GGCU---CGGGGGCAGCGGGCU- -5'
1619 5' -61.4 NC_001347.2 + 170086 0.7 0.548596
Target:  5'- -gCGUC-CCGAGUCgCCGUCuCCCGAc -3'
miRNA:   3'- caGUAGaGGCUCGGgGGCAGcGGGCU- -5'
1619 5' -61.4 NC_001347.2 + 68424 0.71 0.520854
Target:  5'- ----gCUCCuGcAGCuCCCCGUCGCCCGu -3'
miRNA:   3'- caguaGAGG-C-UCG-GGGGCAGCGGGCu -5'
1619 5' -61.4 NC_001347.2 + 38436 0.72 0.458494
Target:  5'- cGUCGUCcCCGccgccGUCCCCGUCGCCgGc -3'
miRNA:   3'- -CAGUAGaGGCu----CGGGGGCAGCGGgCu -5'
1619 5' -61.4 NC_001347.2 + 192902 0.73 0.384611
Target:  5'- uGUCAggUCUCCGuagaucGCUCCCGggUGCCCGAg -3'
miRNA:   3'- -CAGU--AGAGGCu-----CGGGGGCa-GCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.