miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16191 3' -58.4 NC_004065.1 + 71333 0.66 0.910547
Target:  5'- -----uUGGGCauCGCGGCGCUGGAGa- -3'
miRNA:   3'- gcuguuACUCG--GCGCCGUGGCCUCcu -5'
16191 3' -58.4 NC_004065.1 + 116631 0.66 0.910547
Target:  5'- aCGACGucgcgaggGAGCCGCaGGCGuucguCCuGAGGGu -3'
miRNA:   3'- -GCUGUua------CUCGGCG-CCGU-----GGcCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 80381 0.66 0.910547
Target:  5'- gCGGCGcGUGcagggccuGCCGaCGGCGCCGGugacgguGGAc -3'
miRNA:   3'- -GCUGU-UACu-------CGGC-GCCGUGGCCu------CCU- -5'
16191 3' -58.4 NC_004065.1 + 120111 0.66 0.910547
Target:  5'- gCGACGGc-GGCCGCGGCggacgaGCCGGGa-- -3'
miRNA:   3'- -GCUGUUacUCGGCGCCG------UGGCCUccu -5'
16191 3' -58.4 NC_004065.1 + 48331 0.66 0.904708
Target:  5'- uGAgGAUGAGCCGgGGUcggaagACC-GAGGu -3'
miRNA:   3'- gCUgUUACUCGGCgCCG------UGGcCUCCu -5'
16191 3' -58.4 NC_004065.1 + 27842 0.66 0.904708
Target:  5'- uGGCu---GGCCGUGGUGCCGcGGGGc -3'
miRNA:   3'- gCUGuuacUCGGCGCCGUGGC-CUCCu -5'
16191 3' -58.4 NC_004065.1 + 144505 0.66 0.904708
Target:  5'- aCGGCGAcuucGGG-CGCGGCgACCGGAaagaaGGAa -3'
miRNA:   3'- -GCUGUUa---CUCgGCGCCG-UGGCCU-----CCU- -5'
16191 3' -58.4 NC_004065.1 + 82897 0.66 0.904708
Target:  5'- gCGGCAGacgGGGCagaGGUACUGGAGGc -3'
miRNA:   3'- -GCUGUUa--CUCGgcgCCGUGGCCUCCu -5'
16191 3' -58.4 NC_004065.1 + 55415 0.66 0.904112
Target:  5'- cCGGCcuGAUGGGCuguccggggCGCgggucuucgagucGGCGCUGGGGGAa -3'
miRNA:   3'- -GCUG--UUACUCG---------GCG-------------CCGUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 207619 0.66 0.903514
Target:  5'- aGACAA--AGCCGUGGCGCuCGGcaucuuucccauGGAc -3'
miRNA:   3'- gCUGUUacUCGGCGCCGUG-GCCu-----------CCU- -5'
16191 3' -58.4 NC_004065.1 + 227517 0.66 0.902914
Target:  5'- uGACGGUGAGgauuuaGUGGCAuguuagaccgcgacCCGGAGGu -3'
miRNA:   3'- gCUGUUACUCgg----CGCCGU--------------GGCCUCCu -5'
16191 3' -58.4 NC_004065.1 + 174623 0.66 0.899271
Target:  5'- aCGACGAgaaacacucccgucGGuuGCggGGUGCCGGAGGAc -3'
miRNA:   3'- -GCUGUUac------------UCggCG--CCGUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 26954 0.66 0.898656
Target:  5'- cCGGC----GGCCGCGGCGggcuCCGGAGc- -3'
miRNA:   3'- -GCUGuuacUCGGCGCCGU----GGCCUCcu -5'
16191 3' -58.4 NC_004065.1 + 201369 0.66 0.898656
Target:  5'- ------cGAGCUGCGccuCGCCGGGGGGu -3'
miRNA:   3'- gcuguuaCUCGGCGCc--GUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 135647 0.66 0.898656
Target:  5'- cCGACAGcucGCCGCGGCcguaacgcgcGUCGGGGGGc -3'
miRNA:   3'- -GCUGUUacuCGGCGCCG----------UGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 131025 0.66 0.898656
Target:  5'- aGAUAGUGGggguGCUcugGCGGCGCCGGGa-- -3'
miRNA:   3'- gCUGUUACU----CGG---CGCCGUGGCCUccu -5'
16191 3' -58.4 NC_004065.1 + 117392 0.66 0.898656
Target:  5'- uCGACGcucGGCCGCGcGCGCUGGGcucgcggcgcGGAg -3'
miRNA:   3'- -GCUGUuacUCGGCGC-CGUGGCCU----------CCU- -5'
16191 3' -58.4 NC_004065.1 + 69 0.66 0.898656
Target:  5'- aGAaguAUGuGCCGCGGCGCCcucGGcGGc -3'
miRNA:   3'- gCUgu-UACuCGGCGCCGUGG---CCuCCu -5'
16191 3' -58.4 NC_004065.1 + 71826 0.66 0.892393
Target:  5'- aCGACAuacgcGAGCUGCuGGUggagAgCGGAGGGa -3'
miRNA:   3'- -GCUGUua---CUCGGCG-CCG----UgGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 151480 0.66 0.892393
Target:  5'- gGAgAG-GAGCaGCGGCACgCGGAcGGGc -3'
miRNA:   3'- gCUgUUaCUCGgCGCCGUG-GCCU-CCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.