miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16191 3' -58.4 NC_004065.1 + 71333 0.66 0.910547
Target:  5'- -----uUGGGCauCGCGGCGCUGGAGa- -3'
miRNA:   3'- gcuguuACUCG--GCGCCGUGGCCUCcu -5'
16191 3' -58.4 NC_004065.1 + 131025 0.66 0.898656
Target:  5'- aGAUAGUGGggguGCUcugGCGGCGCCGGGa-- -3'
miRNA:   3'- gCUGUUACU----CGG---CGCCGUGGCCUccu -5'
16191 3' -58.4 NC_004065.1 + 135647 0.66 0.898656
Target:  5'- cCGACAGcucGCCGCGGCcguaacgcgcGUCGGGGGGc -3'
miRNA:   3'- -GCUGUUacuCGGCGCCG----------UGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 201369 0.66 0.898656
Target:  5'- ------cGAGCUGCGccuCGCCGGGGGGu -3'
miRNA:   3'- gcuguuaCUCGGCGCc--GUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 71826 0.66 0.892393
Target:  5'- aCGACAuacgcGAGCUGCuGGUggagAgCGGAGGGa -3'
miRNA:   3'- -GCUGUua---CUCGGCG-CCG----UgGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 26954 0.66 0.898656
Target:  5'- cCGGC----GGCCGCGGCGggcuCCGGAGc- -3'
miRNA:   3'- -GCUGuuacUCGGCGCCGU----GGCCUCcu -5'
16191 3' -58.4 NC_004065.1 + 174623 0.66 0.899271
Target:  5'- aCGACGAgaaacacucccgucGGuuGCggGGUGCCGGAGGAc -3'
miRNA:   3'- -GCUGUUac------------UCggCG--CCGUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 227517 0.66 0.902914
Target:  5'- uGACGGUGAGgauuuaGUGGCAuguuagaccgcgacCCGGAGGu -3'
miRNA:   3'- gCUGUUACUCgg----CGCCGU--------------GGCCUCCu -5'
16191 3' -58.4 NC_004065.1 + 55415 0.66 0.904112
Target:  5'- cCGGCcuGAUGGGCuguccggggCGCgggucuucgagucGGCGCUGGGGGAa -3'
miRNA:   3'- -GCUG--UUACUCG---------GCG-------------CCGUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 117392 0.66 0.898656
Target:  5'- uCGACGcucGGCCGCGcGCGCUGGGcucgcggcgcGGAg -3'
miRNA:   3'- -GCUGUuacUCGGCGC-CGUGGCCU----------CCU- -5'
16191 3' -58.4 NC_004065.1 + 66084 0.66 0.885923
Target:  5'- uGGCGAUcGAGUCGUuccugcacGCGCUGGGGGGc -3'
miRNA:   3'- gCUGUUA-CUCGGCGc-------CGUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 176177 0.66 0.885923
Target:  5'- aGACGAUG-G-CGaCGGCGgCGGAGGc -3'
miRNA:   3'- gCUGUUACuCgGC-GCCGUgGCCUCCu -5'
16191 3' -58.4 NC_004065.1 + 151480 0.66 0.892393
Target:  5'- gGAgAG-GAGCaGCGGCACgCGGAcGGGc -3'
miRNA:   3'- gCUgUUaCUCGgCGCCGUG-GCCU-CCU- -5'
16191 3' -58.4 NC_004065.1 + 154651 0.66 0.884604
Target:  5'- gCGACAAguaucaccuccAGCUGCuccucucgGGCACCGuGAGGAc -3'
miRNA:   3'- -GCUGUUac---------UCGGCG--------CCGUGGC-CUCCU- -5'
16191 3' -58.4 NC_004065.1 + 181121 0.66 0.879248
Target:  5'- uGACg--GGGUgGCGGCGgCGGGGaGAg -3'
miRNA:   3'- gCUGuuaCUCGgCGCCGUgGCCUC-CU- -5'
16191 3' -58.4 NC_004065.1 + 139867 0.66 0.879248
Target:  5'- aGGCGGcgGAGCCgGCGGCAggaCGGAcGAg -3'
miRNA:   3'- gCUGUUa-CUCGG-CGCCGUg--GCCUcCU- -5'
16191 3' -58.4 NC_004065.1 + 69 0.66 0.898656
Target:  5'- aGAaguAUGuGCCGCGGCGCCcucGGcGGc -3'
miRNA:   3'- gCUgu-UACuCGGCGCCGUGG---CCuCCu -5'
16191 3' -58.4 NC_004065.1 + 178161 0.66 0.885923
Target:  5'- aCGACAAUcGuGCCGaa-CACCGaGAGGAu -3'
miRNA:   3'- -GCUGUUA-CuCGGCgccGUGGC-CUCCU- -5'
16191 3' -58.4 NC_004065.1 + 120111 0.66 0.910547
Target:  5'- gCGACGGc-GGCCGCGGCggacgaGCCGGGa-- -3'
miRNA:   3'- -GCUGUUacUCGGCGCCG------UGGCCUccu -5'
16191 3' -58.4 NC_004065.1 + 140443 0.66 0.879248
Target:  5'- gCGGCuguu-GCCGCGGCcgaaguaaggugACgGGGGGAg -3'
miRNA:   3'- -GCUGuuacuCGGCGCCG------------UGgCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.