miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16191 3' -58.4 NC_004065.1 + 190082 1.09 0.003082
Target:  5'- cCGACAAUGAGCCGCGGCACCGGAGGAu -3'
miRNA:   3'- -GCUGUUACUCGGCGCCGUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 22492 0.79 0.245148
Target:  5'- aCGACGcgGAGCgCGCGGCGa-GGAGGAc -3'
miRNA:   3'- -GCUGUuaCUCG-GCGCCGUggCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 171961 0.79 0.274682
Target:  5'- gGGCGGUGgcGGCgGCGGCGgCGGAGGGg -3'
miRNA:   3'- gCUGUUAC--UCGgCGCCGUgGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 20882 0.78 0.28727
Target:  5'- gCGACAc--GGCCGCGGCGCUGG-GGAa -3'
miRNA:   3'- -GCUGUuacUCGGCGCCGUGGCCuCCU- -5'
16191 3' -58.4 NC_004065.1 + 61333 0.77 0.342141
Target:  5'- aCGGCGA-GAGCCGCGGCGacCCGGGcGAa -3'
miRNA:   3'- -GCUGUUaCUCGGCGCCGU--GGCCUcCU- -5'
16191 3' -58.4 NC_004065.1 + 7317 0.76 0.38802
Target:  5'- uGACGAUcGAGCCgGUGGUACCGGAcgcggcGGAg -3'
miRNA:   3'- gCUGUUA-CUCGG-CGCCGUGGCCU------CCU- -5'
16191 3' -58.4 NC_004065.1 + 153272 0.75 0.426672
Target:  5'- gGACGAUGAcgagGCCGcCGGCGCCGcgcccguccccgccGAGGAg -3'
miRNA:   3'- gCUGUUACU----CGGC-GCCGUGGC--------------CUCCU- -5'
16191 3' -58.4 NC_004065.1 + 120405 0.75 0.43776
Target:  5'- uCGACGgugGUGGGCacCGCGGC-CCGGGGGu -3'
miRNA:   3'- -GCUGU---UACUCG--GCGCCGuGGCCUCCu -5'
16191 3' -58.4 NC_004065.1 + 156307 0.74 0.472878
Target:  5'- -aGCAGUGGcGCCagcaGCGGCGgCGGAGGAg -3'
miRNA:   3'- gcUGUUACU-CGG----CGCCGUgGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 77978 0.73 0.514936
Target:  5'- aGACGcUG-GCCGCGGCGagccgccccgggaCGGAGGAg -3'
miRNA:   3'- gCUGUuACuCGGCGCCGUg------------GCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 209958 0.73 0.546971
Target:  5'- aCGGCAGU--GCCGCGGCagaGCCGGuAGGu -3'
miRNA:   3'- -GCUGUUAcuCGGCGCCG---UGGCC-UCCu -5'
16191 3' -58.4 NC_004065.1 + 189632 0.73 0.556517
Target:  5'- aCGACGAUGA-CgGCGGaggacCCGGAGGAc -3'
miRNA:   3'- -GCUGUUACUcGgCGCCgu---GGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 142772 0.72 0.585418
Target:  5'- aCGACGGccUGcuGGUgGUGGCGCCGGGGGc -3'
miRNA:   3'- -GCUGUU--AC--UCGgCGCCGUGGCCUCCu -5'
16191 3' -58.4 NC_004065.1 + 104650 0.72 0.595122
Target:  5'- aGGCGcugGAGCUgaccaagguGCGcGCGCCGGAGGGu -3'
miRNA:   3'- gCUGUua-CUCGG---------CGC-CGUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 112564 0.72 0.604849
Target:  5'- gCGGCGAgcGGCCGCGGaGCCGGAcGAc -3'
miRNA:   3'- -GCUGUUacUCGGCGCCgUGGCCUcCU- -5'
16191 3' -58.4 NC_004065.1 + 6619 0.72 0.614595
Target:  5'- aGGCGAUGuuucuCCGCGGCugUcGGAGGGg -3'
miRNA:   3'- gCUGUUACuc---GGCGCCGugG-CCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 191172 0.71 0.634117
Target:  5'- uGGCGAUGGGCguccCGCGGCagauguggagGCUGGGGGu -3'
miRNA:   3'- gCUGUUACUCG----GCGCCG----------UGGCCUCCu -5'
16191 3' -58.4 NC_004065.1 + 153640 0.71 0.634117
Target:  5'- aCGGCGGcGAGCUcauccgcgGCGGCGCCGGcgcgauGGAg -3'
miRNA:   3'- -GCUGUUaCUCGG--------CGCCGUGGCCu-----CCU- -5'
16191 3' -58.4 NC_004065.1 + 203064 0.71 0.643879
Target:  5'- uGGCGAgcuccgGAgcccGCCGCGGcCGCCGGAGcGGu -3'
miRNA:   3'- gCUGUUa-----CU----CGGCGCC-GUGGCCUC-CU- -5'
16191 3' -58.4 NC_004065.1 + 64364 0.71 0.643879
Target:  5'- cCGACcGUccucaGGGCCGCGGC--CGGAGGGa -3'
miRNA:   3'- -GCUGuUA-----CUCGGCGCCGugGCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.