miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16191 3' -58.4 NC_004065.1 + 178161 0.66 0.885923
Target:  5'- aCGACAAUcGuGCCGaa-CACCGaGAGGAu -3'
miRNA:   3'- -GCUGUUA-CuCGGCgccGUGGC-CUCCU- -5'
16191 3' -58.4 NC_004065.1 + 66084 0.66 0.885923
Target:  5'- uGGCGAUcGAGUCGUuccugcacGCGCUGGGGGGc -3'
miRNA:   3'- gCUGUUA-CUCGGCGc-------CGUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 176177 0.66 0.885923
Target:  5'- aGACGAUG-G-CGaCGGCGgCGGAGGc -3'
miRNA:   3'- gCUGUUACuCgGC-GCCGUgGCCUCCu -5'
16191 3' -58.4 NC_004065.1 + 154651 0.66 0.884604
Target:  5'- gCGACAAguaucaccuccAGCUGCuccucucgGGCACCGuGAGGAc -3'
miRNA:   3'- -GCUGUUac---------UCGGCG--------CCGUGGC-CUCCU- -5'
16191 3' -58.4 NC_004065.1 + 139867 0.66 0.879248
Target:  5'- aGGCGGcgGAGCCgGCGGCAggaCGGAcGAg -3'
miRNA:   3'- gCUGUUa-CUCGG-CGCCGUg--GCCUcCU- -5'
16191 3' -58.4 NC_004065.1 + 181121 0.66 0.879248
Target:  5'- uGACg--GGGUgGCGGCGgCGGGGaGAg -3'
miRNA:   3'- gCUGuuaCUCGgCGCCGUgGCCUC-CU- -5'
16191 3' -58.4 NC_004065.1 + 140443 0.66 0.879248
Target:  5'- gCGGCuguu-GCCGCGGCcgaaguaaggugACgGGGGGAg -3'
miRNA:   3'- -GCUGuuacuCGGCGCCG------------UGgCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 140119 0.67 0.872374
Target:  5'- gGACGugcgGAGguCCG-GGCACgGGAGGGa -3'
miRNA:   3'- gCUGUua--CUC--GGCgCCGUGgCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 81326 0.67 0.872374
Target:  5'- uGGCGAUG-GCCGCGGCcUCGaAGuGAa -3'
miRNA:   3'- gCUGUUACuCGGCGCCGuGGCcUC-CU- -5'
16191 3' -58.4 NC_004065.1 + 181842 0.67 0.872374
Target:  5'- aCGACAA-GGGCuucCGCGGUAUCGGAc-- -3'
miRNA:   3'- -GCUGUUaCUCG---GCGCCGUGGCCUccu -5'
16191 3' -58.4 NC_004065.1 + 109612 0.67 0.871675
Target:  5'- uCGACccccGGGCCGCGGUgcccaccACCGucGAGGGc -3'
miRNA:   3'- -GCUGuua-CUCGGCGCCG-------UGGC--CUCCU- -5'
16191 3' -58.4 NC_004065.1 + 174125 0.67 0.865303
Target:  5'- gGACuccGUGAGaggUGCGGCAUCGGccuGGAc -3'
miRNA:   3'- gCUGu--UACUCg--GCGCCGUGGCCu--CCU- -5'
16191 3' -58.4 NC_004065.1 + 129130 0.67 0.858041
Target:  5'- gGACGAUcAGCaGUGcGCGgCGGAGGAg -3'
miRNA:   3'- gCUGUUAcUCGgCGC-CGUgGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 121924 0.67 0.858041
Target:  5'- gCGGCug-GGGCCGaGGCACCGc-GGAu -3'
miRNA:   3'- -GCUGuuaCUCGGCgCCGUGGCcuCCU- -5'
16191 3' -58.4 NC_004065.1 + 35559 0.67 0.858041
Target:  5'- aGGC-GUGAGCgGCGGCGCCGc---- -3'
miRNA:   3'- gCUGuUACUCGgCGCCGUGGCcuccu -5'
16191 3' -58.4 NC_004065.1 + 117063 0.67 0.858041
Target:  5'- gCGaACGuucGGCCGCGGCGCuguCGGuGGAg -3'
miRNA:   3'- -GC-UGUuacUCGGCGCCGUG---GCCuCCU- -5'
16191 3' -58.4 NC_004065.1 + 78671 0.67 0.858041
Target:  5'- gCGGCcg-GcGCCGCGGCGCCcGAGa- -3'
miRNA:   3'- -GCUGuuaCuCGGCGCCGUGGcCUCcu -5'
16191 3' -58.4 NC_004065.1 + 120348 0.67 0.850594
Target:  5'- gCGGCGAUGucGUCGgaGaGCGcCCGGAGGAc -3'
miRNA:   3'- -GCUGUUACu-CGGCg-C-CGU-GGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 149916 0.67 0.850594
Target:  5'- gGAUGAgGGGCgCGCGGC-UCGGcAGGAg -3'
miRNA:   3'- gCUGUUaCUCG-GCGCCGuGGCC-UCCU- -5'
16191 3' -58.4 NC_004065.1 + 163643 0.67 0.850594
Target:  5'- gCGGCGGcgGcGGCaGCGGCAgCGGAGGc -3'
miRNA:   3'- -GCUGUUa-C-UCGgCGCCGUgGCCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.