miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16191 3' -58.4 NC_004065.1 + 69 0.66 0.898656
Target:  5'- aGAaguAUGuGCCGCGGCGCCcucGGcGGc -3'
miRNA:   3'- gCUgu-UACuCGGCGCCGUGG---CCuCCu -5'
16191 3' -58.4 NC_004065.1 + 6619 0.72 0.614595
Target:  5'- aGGCGAUGuuucuCCGCGGCugUcGGAGGGg -3'
miRNA:   3'- gCUGUUACuc---GGCGCCGugG-CCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 7317 0.76 0.38802
Target:  5'- uGACGAUcGAGCCgGUGGUACCGGAcgcggcGGAg -3'
miRNA:   3'- gCUGUUA-CUCGG-CGCCGUGGCCU------CCU- -5'
16191 3' -58.4 NC_004065.1 + 20882 0.78 0.28727
Target:  5'- gCGACAc--GGCCGCGGCGCUGG-GGAa -3'
miRNA:   3'- -GCUGUuacUCGGCGCCGUGGCCuCCU- -5'
16191 3' -58.4 NC_004065.1 + 22492 0.79 0.245148
Target:  5'- aCGACGcgGAGCgCGCGGCGa-GGAGGAc -3'
miRNA:   3'- -GCUGUuaCUCG-GCGCCGUggCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 26954 0.66 0.898656
Target:  5'- cCGGC----GGCCGCGGCGggcuCCGGAGc- -3'
miRNA:   3'- -GCUGuuacUCGGCGCCGU----GGCCUCcu -5'
16191 3' -58.4 NC_004065.1 + 27842 0.66 0.904708
Target:  5'- uGGCu---GGCCGUGGUGCCGcGGGGc -3'
miRNA:   3'- gCUGuuacUCGGCGCCGUGGC-CUCCu -5'
16191 3' -58.4 NC_004065.1 + 34175 0.71 0.673086
Target:  5'- aGACcGUGAGuuGaCGGCGCCGGcgccagacGGAg -3'
miRNA:   3'- gCUGuUACUCggC-GCCGUGGCCu-------CCU- -5'
16191 3' -58.4 NC_004065.1 + 35559 0.67 0.858041
Target:  5'- aGGC-GUGAGCgGCGGCGCCGc---- -3'
miRNA:   3'- gCUGuUACUCGgCGCCGUGGCcuccu -5'
16191 3' -58.4 NC_004065.1 + 48331 0.66 0.904708
Target:  5'- uGAgGAUGAGCCGgGGUcggaagACC-GAGGu -3'
miRNA:   3'- gCUgUUACUCGGCgCCG------UGGcCUCCu -5'
16191 3' -58.4 NC_004065.1 + 55415 0.66 0.904112
Target:  5'- cCGGCcuGAUGGGCuguccggggCGCgggucuucgagucGGCGCUGGGGGAa -3'
miRNA:   3'- -GCUG--UUACUCG---------GCG-------------CCGUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 58905 0.67 0.835164
Target:  5'- gGACGAUGAG-CGCGGgGgUGGgcAGGAa -3'
miRNA:   3'- gCUGUUACUCgGCGCCgUgGCC--UCCU- -5'
16191 3' -58.4 NC_004065.1 + 61333 0.77 0.342141
Target:  5'- aCGGCGA-GAGCCGCGGCGacCCGGGcGAa -3'
miRNA:   3'- -GCUGUUaCUCGGCGCCGU--GGCCUcCU- -5'
16191 3' -58.4 NC_004065.1 + 61537 0.69 0.767279
Target:  5'- aGGCGAUcGcAGUCGCGGUagaagGCCGaGAGGGg -3'
miRNA:   3'- gCUGUUA-C-UCGGCGCCG-----UGGC-CUCCU- -5'
16191 3' -58.4 NC_004065.1 + 62378 0.68 0.793768
Target:  5'- gCGGCGG-GGGUgGUGGCGgCGGGGGu -3'
miRNA:   3'- -GCUGUUaCUCGgCGCCGUgGCCUCCu -5'
16191 3' -58.4 NC_004065.1 + 64364 0.71 0.643879
Target:  5'- cCGACcGUccucaGGGCCGCGGC--CGGAGGGa -3'
miRNA:   3'- -GCUGuUA-----CUCGGCGCCGugGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 64445 0.7 0.692417
Target:  5'- aGACGcUGAggaacugucgcGCCGUGGCcgagcuGCUGGAGGAg -3'
miRNA:   3'- gCUGUuACU-----------CGGCGCCG------UGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 66084 0.66 0.885923
Target:  5'- uGGCGAUcGAGUCGUuccugcacGCGCUGGGGGGc -3'
miRNA:   3'- gCUGUUA-CUCGGCGc-------CGUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 66610 0.67 0.850594
Target:  5'- gGACAGgauccgGAGCCGCGGgCugCGGc--- -3'
miRNA:   3'- gCUGUUa-----CUCGGCGCC-GugGCCuccu -5'
16191 3' -58.4 NC_004065.1 + 66879 0.68 0.810775
Target:  5'- gGACGAcGAGCCGCuGU-CCGGAGa- -3'
miRNA:   3'- gCUGUUaCUCGGCGcCGuGGCCUCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.