miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16191 3' -58.4 NC_004065.1 + 109881 0.68 0.819062
Target:  5'- cCGGCGuc--GCCGCGGCcgcgUCGGGGGGu -3'
miRNA:   3'- -GCUGUuacuCGGCGCCGu---GGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 72476 0.69 0.749061
Target:  5'- aGACGGUGucGgCGCGGCugaagACCGGGGaGAa -3'
miRNA:   3'- gCUGUUACu-CgGCGCCG-----UGGCCUC-CU- -5'
16191 3' -58.4 NC_004065.1 + 113410 0.69 0.752736
Target:  5'- gCGACGucGUG-GCCagggagcugcgcagaGCGGCgGCCGGGGGGc -3'
miRNA:   3'- -GCUGU--UACuCGG---------------CGCCG-UGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 214193 0.69 0.758221
Target:  5'- uCGACGG-GAGCgGgGGgACCGGGGuGAu -3'
miRNA:   3'- -GCUGUUaCUCGgCgCCgUGGCCUC-CU- -5'
16191 3' -58.4 NC_004065.1 + 61537 0.69 0.767279
Target:  5'- aGGCGAUcGcAGUCGCGGUagaagGCCGaGAGGGg -3'
miRNA:   3'- gCUGUUA-C-UCGGCGCCG-----UGGC-CUCCU- -5'
16191 3' -58.4 NC_004065.1 + 62378 0.68 0.793768
Target:  5'- gCGGCGG-GGGUgGUGGCGgCGGGGGu -3'
miRNA:   3'- -GCUGUUaCUCGgCGCCGUgGCCUCCu -5'
16191 3' -58.4 NC_004065.1 + 128519 0.68 0.793768
Target:  5'- aCGACGAUGccuCCGCGGCGucgaCGGAGa- -3'
miRNA:   3'- -GCUGUUACuc-GGCGCCGUg---GCCUCcu -5'
16191 3' -58.4 NC_004065.1 + 152913 0.68 0.814108
Target:  5'- uGACGAUGucggcggcgcugccGCCGCGGCAaaUCGacGAGGAg -3'
miRNA:   3'- gCUGUUACu-------------CGGCGCCGU--GGC--CUCCU- -5'
16191 3' -58.4 NC_004065.1 + 68319 0.68 0.819062
Target:  5'- aGACGGUGucGUCGUGGCugCGGGa-- -3'
miRNA:   3'- gCUGUUACu-CGGCGCCGugGCCUccu -5'
16191 3' -58.4 NC_004065.1 + 71956 0.69 0.749061
Target:  5'- gCGACGccgccggugGAGCCG-GGCAgcCCGGAGGc -3'
miRNA:   3'- -GCUGUua-------CUCGGCgCCGU--GGCCUCCu -5'
16191 3' -58.4 NC_004065.1 + 76737 0.7 0.730468
Target:  5'- uCGGCGggGAcgGgCGCGGCGCCGGcGGc -3'
miRNA:   3'- -GCUGUuaCU--CgGCGCCGUGGCCuCCu -5'
16191 3' -58.4 NC_004065.1 + 149703 0.7 0.692417
Target:  5'- aCGcCGggGGGCCGCGGCcgcGCCGGcccucGGAc -3'
miRNA:   3'- -GCuGUuaCUCGGCGCCG---UGGCCu----CCU- -5'
16191 3' -58.4 NC_004065.1 + 20882 0.78 0.28727
Target:  5'- gCGACAc--GGCCGCGGCGCUGG-GGAa -3'
miRNA:   3'- -GCUGUuacUCGGCGCCGUGGCCuCCU- -5'
16191 3' -58.4 NC_004065.1 + 61333 0.77 0.342141
Target:  5'- aCGGCGA-GAGCCGCGGCGacCCGGGcGAa -3'
miRNA:   3'- -GCUGUUaCUCGGCGCCGU--GGCCUcCU- -5'
16191 3' -58.4 NC_004065.1 + 77978 0.73 0.514936
Target:  5'- aGACGcUG-GCCGCGGCGagccgccccgggaCGGAGGAg -3'
miRNA:   3'- gCUGUuACuCGGCGCCGUg------------GCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 142772 0.72 0.585418
Target:  5'- aCGACGGccUGcuGGUgGUGGCGCCGGGGGc -3'
miRNA:   3'- -GCUGUU--AC--UCGgCGCCGUGGCCUCCu -5'
16191 3' -58.4 NC_004065.1 + 64364 0.71 0.643879
Target:  5'- cCGACcGUccucaGGGCCGCGGC--CGGAGGGa -3'
miRNA:   3'- -GCUGuUA-----CUCGGCGCCGugGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 101881 0.71 0.650708
Target:  5'- aGACGAcGAcGCCGgGGCggcuccuccgagcuGCUGGAGGAg -3'
miRNA:   3'- gCUGUUaCU-CGGCgCCG--------------UGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 135759 0.71 0.663371
Target:  5'- gCGACGccuGGCuCGUgaacGGCACCGGAGGGg -3'
miRNA:   3'- -GCUGUuacUCG-GCG----CCGUGGCCUCCU- -5'
16191 3' -58.4 NC_004065.1 + 64445 0.7 0.692417
Target:  5'- aGACGcUGAggaacugucgcGCCGUGGCcgagcuGCUGGAGGAg -3'
miRNA:   3'- gCUGUuACU-----------CGGCGCCG------UGGCCUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.